Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0526 ATGGTGGACGGCGGAGAATTCGCCGGCACCATTTGCTCGATCTGTTACGAGCCTCTCAACCCCATTACCGAGGACCTCCAATCGGTTTCCATCTGCGGCCACGTCTTTCACGAGCTTTGTCTGCAGCAATGGTTCGAGTACTCTACGAAAGGGAAGAACCACACTTGCCCCATTTGTAAACAGAGTTGCGGGGCCAGCGACGCGTGCAGGCTTTATTTTCAGTCAGTGGGGGACGTGAGCGATGGCGAGAATCTTCTGAAGAGCTTTGAATCTGAGGAAAATGTCGGGCTTCTGCGTAAGGAAGTGAAGAGGTTGGAGGTGAAAGTTTCGGGGCTCACTTCTGAGCTAGAACGGCAAACAAAGGAACTAGAAGGAGTTAAGCTGGAGCTTTGTATTTGCAAGGAGCAGGCAAAGAAAGAAACAGCATTAAAGAGTGAGGCACTAAATCAAAAAGCGTCCATACAATTCCAGTTTCGTAAGAAATCAGAGGAACTTGAGCAGTCAACTTTGGAGTCTTTTAGATTAAAAGAAAAGAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACCTTGATGAAGAGGAGGTTTTGAAGCTTGCCACTTTCGGTAATGGGGCCAACAGTAAAGACACTATAGATACATTGAAAAGATCTCTGGTCATGCGGAACAGGAGTTACAAAGAATTGATGGCCAAGTGCAATGTTCTTGGAAGAGGTGAGGCTCGTTATAGCAAAAAGCTTGAGAAGGCCAAAGAAAAGATCACTAAACTGAAGGCAAGGGTACTAGAACTGGAGACATTAGCTGAAGCAAAAGAGAATGAATATCTGAAGTCTCTTAAACTTTCAAAGAGAACGAAGAGTTCAAAGAATCTTGAGAATAATTACACTGATTCTGATGAATTGACAGCTTGCAAATTTTCAGTAGAAAAACCAAGCAAACAAATTTCAACACCCAAATCTGGAATAAACCTGCCTGCAAACGACAACCCTCAATCTTTGAAGATGGAGAACTCTAATGGTACTTCAAATAAGACTGTGAATATTAGTAATATAACTCCTGATAAAGAGAGAGACTATATTACAATTGATGAAGATGACTTAGAAGGCACTAAACCTTTGCAAGGATGTTCAAAATACAGCTACAAAGACCGAGACATGGATGGTATTGCTTTTAGCAAGCCTTCTCTAGCGAAGCCAGAGACCACGTCTGCCACAAAGACCGAAACATTATTGCTACGAAAATGTACTTTGGCCGAGTCTCCCAGAGTTGATATTGACATTGACATGACTAACAATTCAGCTGGTCCTGTGGATGAAGAAGTAACTTTGCAAACCACCATTAAACAACCTGTGTTGAACATTAGAAAGGAGTCACCGTTTACACTTTCAAATTCAGATAATATCTGCTTTTCTGGTGGATTGCTCGGTCCTGATGGAACTCATCGGTTTTTGGGAAAATGGTGCAAGCGTGGACAGAACAGTGAATCATCATCTGCAAAAAGATCAAGTAATGGGGATTTAATAGCTGTAGGGGCTGATGGTAGAGGTGGCAGAATAAAAGTTCTAAGGACTCCTACCCAAATCCTCTCGGGTGGTAAGGAAAACTCAGCAAGTTCAAAAAGGTTAAAGCCTGGAGCTAAAACAAGTAGTTTGCATTCCCAGGGATGTCTGCAGATAGAACACTTTTTTGGGAGAGTCACTCAGTAA 1725 0.4243 MVDGGEFAGTICSICYEPLNPITEDLQSVSICGHVFHELCLQQWFEYSTKGKNHTCPICKQSCGASDACRLYFQSVGDVSDGENLLKSFESEENVGLLRKEVKRLEVKVSGLTSELERQTKELEGVKLELCICKEQAKKETALKSEALNQKASIQFQFRKKSEELEQSTLESFRLKEKNMALAKELAALKLVSDLDLDEEEVLKLATFGNGANSKDTIDTLKRSLVMRNRSYKELMAKCNVLGRGEARYSKKLEKAKEKITKLKARVLELETLAEAKENEYLKSLKLSKRTKSSKNLENNYTDSDELTACKFSVEKPSKQISTPKSGINLPANDNPQSLKMENSNGTSNKTVNISNITPDKERDYITIDEDDLEGTKPLQGCSKYSYKDRDMDGIAFSKPSLAKPETTSATKTETLLLRKCTLAESPRVDIDIDMTNNSAGPVDEEVTLQTTIKQPVLNIRKESPFTLSNSDNICFSGGLLGPDGTHRFLGKWCKRGQNSESSSAKRSSNGDLIAVGADGRGGRIKVLRTPTQILSGGKENSASSKRLKPGAKTSSLHSQGCLQIEHFFGRVTQ* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0526 574 CDD RING-H2 12 60 - -
Vra9g0526 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 66 IPR013083 -
Vra9g0526 574 MobiDBLite consensus disorder prediction 534 555 - -
Vra9g0526 574 SMART ringv_2 11 60 IPR011016 GO:0008270
Vra9g0526 574 Pfam Ring finger domain 11 60 IPR001841 -
Vra9g0526 574 Coils Coil 102 129 - -
Vra9g0526 574 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 573 - -
Vra9g0526 574 MobiDBLite consensus disorder prediction 529 555 - -
Vra9g0526 574 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Vra9g0526 574 Coils Coil 246 280 - -
Vra9g0526 574 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 573 - -
Vra9g0526 574 MobiDBLite consensus disorder prediction 318 355 - -
Vra9g0526 574 SUPERFAMILY RING/U-box 10 64 - -
Vra9g0526 574 SMART ring_2 12 59 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0526 1 574 C3H Transcription Factor Family AT4G01270 41.952 3.54e-124 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0526 K11985 - gmx:100812811 815.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0526 9 5680369 5684917 Vra9g0526 9 5680369 5684917 ECH