Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0524 ATGGAACCAGATTGGGATCTCCACGCCCTCGTCAGAAGCTGCACCACCACTTCTTCTCCCGCCGCCGCCGCCACGACGACCGTATCCACCACCTCATCTGGTTTTGGGGCTTCTGCCCCACCTTCTACTTCCCGCAGCTTCTTCTCTGTTTACAACCCTGCTGTACAAGAAGGCCAAATTGTGTCCCCTTCGGAGAACCCCTATGGAGCAAGGCCTTCCATTGAAGAGCTTCACGAGCTTTGCAAGCCTTTCTTCATCAAACCACAGCCTCACACCTTCCAAGCTTCTTCTCCTCTTTCTTCCTTTTCTTATTCATCAGTGTCCAAATCACCTTGTATCCAGCAAGAACAGAAGCAGCCTCCCCAACCAGGTTCTGCCTCGACCCCAAAACAGAAAAAAAGGAAGAATCAGGTTAAGAAGGTTTGTGATGTGGCAGCTGAGAACCTCTCCTCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATCAAAGGGTCACCATATCCAAGGGGATATTACAGATGTAGCAGCTCAAAAGGATGTTTAGCCAGAAAACAAGTGGAGAGGAACAAATCGGACCCAACAATGTTTGTAGTGACATACACTGGTGAACACAACCACCCTGCTCCTACTCATAAAAGCTCCCTTGCTGGCTCCACTCGCTACAAACCTCAGATTGGTGGAGACACAGCCACCACAAGACCTGTTTCTCCAGCGACCTCATCAGAGGTGGCACAGCACAGTACAAAGTCAGAGTGCACAGAAGAGGAGTTGGAAGATCTGATGAAAGATGATGATGAAGAAGCAAATGAATTTGACTTAACAGAATCAGTGGTATCAGATGATTTCTTTGAAGGGTTAGAGGAACTGACAGAGTCTCCCTTTACAGCTAGTAGTATCATTGATCGGTGGTCACTGACCAATAATGCTACCACTGCCGCTGGTGGTAGCTGA 957 0.4848 MEPDWDLHALVRSCTTTSSPAAAATTTVSTTSSGFGASAPPSTSRSFFSVYNPAVQEGQIVSPSENPYGARPSIEELHELCKPFFIKPQPHTFQASSPLSSFSYSSVSKSPCIQQEQKQPPQPGSASTPKQKKRKNQVKKVCDVAAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKSDPTMFVVTYTGEHNHPAPTHKSSLAGSTRYKPQIGGDTATTRPVSPATSSEVAQHSTKSECTEEELEDLMKDDDEEANEFDLTESVVSDDFFEGLEELTESPFTASSIIDRWSLTNNATTAAGGS* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0524 318 ProSiteProfiles WRKY domain profile. 145 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0524 318 SMART WRKY_cls 150 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0524 318 MobiDBLite consensus disorder prediction 111 131 - -
Vra9g0524 318 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0524 318 MobiDBLite consensus disorder prediction 111 139 - -
Vra9g0524 318 MobiDBLite consensus disorder prediction 17 39 - -
Vra9g0524 318 MobiDBLite consensus disorder prediction 259 273 - -
Vra9g0524 318 Gene3D WRKY domain 134 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra9g0524 318 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 294 IPR044810 GO:0003700
Vra9g0524 318 MobiDBLite consensus disorder prediction 203 273 - -
Vra9g0524 318 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 294 - -
Vra9g0524 318 SUPERFAMILY WRKY DNA-binding domain 147 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra9g0524 318 MobiDBLite consensus disorder prediction 208 249 - -
Vra9g0524 318 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0524 Vra-Chr9 5658663 5660286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0524 1 317 WRKY Transcription Factor Family AT4G01250 44.083 3.15e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra9g0524 WRKY 4.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0524 K13425 - gmx:100815829 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0524 9 5658663 5660286 Vra8g2193 8 40305918 40308043 ECH
Vra9g0524 9 5658663 5660286 Vra9g0524 9 5658663 5660286 ECH
Vra9g0524 9 5658663 5660286 Vra4g0815 4 15092313 15094302 ECH
Vra4g0815 4 15092313 15094302 Vra9g0524 9 5658663 5660286 PCT