Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0505 ATGCAGCAGCTAATACCCCCACCCACCTCCTTTGGCCCTCACAACAAACACATAATACATTTACACTATTCCCTCCCCTCTCCTTTCACAAATGGAGAATTTCCCAACTCATCCTTCTTCTTCTTCTTCTTCTTTTATTTCTTTTTCTTTTTCATCTTCTTCTCTTCAATGTCCTCCTTCAACTCCTTCTCCCCTCCACCCCCCACCCCTTACTTCACCAACCTCGGCTTCGGCTACTCCATCGCCATCGCCCTCGGAGTCCTCTTCCTCATCTCCACTCTCATCCTCTCCTCCTACCTCTGCTGCCGCACCCTCCGCCACCGCAACAACAACCAACGCCGTCGCCGCCACAACCCCCACGCCCCTGATGGCATCGTCCTCCCGCGCGTTATCTTCGTCGCCGAGGACGACGACGACGGCGCCCGTCAGAACGACGCCGTCTCCGGCCTCGAACAGTCCGTCATAAACTCCTACCCCAAGTTCTCCTTCGCGAAAGACGGCGGCTACGACACCACGTGCTCCATCTGTCTCTGCGAGTACAAGGATTCGGAGATGCTTAGAATGATGCCCGAGTGTCGACACTACTTTCACCTCTGCTGTCTCGACCCCTGGCTCAAGCTCAACGGCTCCTGCCCCGTGTGCCGGAACTCCCCCATGCCCACGCCGCTGTCCACGCCGCTTCAGGAGGTCGTGCCGCTATCGCAGTACGCCGCCGATGCTAGGGGGAGGAGGTGA 735 0.5741 MQQLIPPPTSFGPHNKHIIHLHYSLPSPFTNGEFPNSSFFFFFFFYFFFFFIFFSSMSSFNSFSPPPPTPYFTNLGFGYSIAIALGVLFLISTLILSSYLCCRTLRHRNNNQRRRRHNPHAPDGIVLPRVIFVAEDDDDGARQNDAVSGLEQSVINSYPKFSFAKDGGYDTTCSICLCEYKDSEMLRMMPECRHYFHLCCLDPWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSQYAADARGRR* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0505 244 ProSiteProfiles Zinc finger RING-type profile. 173 215 IPR001841 -
Vra9g0505 244 CDD RING-H2_PA-TM-RING 172 215 - -
Vra9g0505 244 SUPERFAMILY RING/U-box 157 219 - -
Vra9g0505 244 SMART ring_2 173 214 IPR001841 -
Vra9g0505 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 220 IPR013083 -
Vra9g0505 244 PANTHER RING-H2 FINGER PROTEIN ATL67 58 242 IPR044289 GO:0016567|GO:0016740
Vra9g0505 244 Pfam Ring finger domain 172 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0505 Vra-Chr9 5349567 5351389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0505 62 235 C3H Transcription Factor Family AT5G06490 36.269 1.08e-34 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0505 - - vra:106773185 449.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0859 4 15673891 15674999 Vra9g0505 9 5349567 5351389 PCT