Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0479 ATGGGAAACAGTGAGGAAGGGAAATCTGTTAAAACTGGAAGTCCTTCTTCACCAGCAACAACTGCCAATCAGACATATCAGCCTAACATTCATGTCTATCCTGATTGGGCTGCCATGCAGTATTATGGGCCAAGAGTCAACGTTCCTCCATACTTCAACTCAACTGTGGCTTCTGGTCATGCTCCACACCCATTCATGTGGGGTCCGCCACAGCCTATGATGCCACCTTATGGGCCACCATATGCAGCATTTTATCCTCCTGGTGGAGTTTATACTCACCCTGCAGTTGCTATTGGGCCACATTCACACGGCCAGGGAGTTCCATCTCCACCTGCTGCTGGGACTCCTTCAAGTGTGGATTCACCGACAAAATTATCTGGAAATACTGATCAGGGGTTAATGAAGAAATTGAAAGGATTTGATGGGCTTGCAATGTCAATAGGCAATTGCAATGCAGAGAGTGCTGAGCTTGGAGCTGAAAACAGGCTGTCACAGAGTGTGGATACTGAGGGTTCTAGCGATGGAAGTGATGGCAACACTGCAGGGGCTAATCAAACAAAAATGAAAAGAAGCCGAGAGGAAACATCAACCACTGATGGAGAAGGGAAAACTGAGACACAAGATGGCCCAATTTCCAAAGAGACTGCATCTTCGAAAATAGTTGTGCCTGCTACCCCAGCTAGTATTGCAGGAAAGTTTGTAGGTCCTGTAATTTCTTCAGGTATGACCACAGCATTGGAGCTTAGGAACTCTTTGACTGTTCATTCTAAGGAAAATCTCACGAGTGCCCCACAACCTTGTGCAGCTGTGCCTCCTGAAGCTTGGATACAGAATGAGCGTGAGTTGAAACGGGAGAGGAGGAAACAATCTAACCGTGAATCTGCTAGAAGGTCCAGGCTGAGGAAGCAGGCCGAGACTGAAGAATTGGCCCGAAAAGTTGAGATGTTAACTGCTGAAAATGTGTCACTGAAGTCAGAAATAACTAAATTGACTGAAGGTTCTGAGCAGATGAGGATGGAAAATTCTGCATTGAGGGAAAAACTGATAAATACTCAACTGGGACAAAGGGAAGAGATAATTTTGGAAAGCATTGACAGCAAGAGGTCTACACCAGTAAGTACTGAGAACCTGCTATCAAGAGTTAATAATTCCAGTTCTAACGATAGAAGTGCAGACAATGAGAGTGATTTCTGTGAGAACAAACCAAATTCTGGTGCAAAGCTGCATCAACTACTGGATACAAATCCTAGAGCTGATGCTGTTGCTGCTGGGTGA 1275 0.4533 MGNSEEGKSVKTGSPSSPATTANQTYQPNIHVYPDWAAMQYYGPRVNVPPYFNSTVASGHAPHPFMWGPPQPMMPPYGPPYAAFYPPGGVYTHPAVAIGPHSHGQGVPSPPAAGTPSSVDSPTKLSGNTDQGLMKKLKGFDGLAMSIGNCNAESAELGAENRLSQSVDTEGSSDGSDGNTAGANQTKMKRSREETSTTDGEGKTETQDGPISKETASSKIVVPATPASIAGKFVGPVISSGMTTALELRNSLTVHSKENLTSAPQPCAAVPPEAWIQNERELKRERRKQSNRESARRSRLRKQAETEELARKVEMLTAENVSLKSEITKLTEGSEQMRMENSALREKLINTQLGQREEIILESIDSKRSTPVSTENLLSRVNNSSSNDRSADNESDFCENKPNSGAKLHQLLDTNPRADAVAAG* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0479 424 Pfam Disordered region downstream of MFMR 130 258 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 367 391 - -
Vra9g0479 424 Gene3D - 282 336 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 281 307 - -
Vra9g0479 424 SUPERFAMILY Leucine zipper domain 282 337 IPR046347 GO:0003700|GO:0006355
Vra9g0479 424 Pfam bZIP transcription factor 279 341 IPR004827 GO:0003700|GO:0006355
Vra9g0479 424 MobiDBLite consensus disorder prediction 187 201 - -
Vra9g0479 424 CDD bZIP_plant_GBF1 284 332 IPR045314 GO:0003700|GO:0006355
Vra9g0479 424 Coils Coil 306 326 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 111 130 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 158 186 - -
Vra9g0479 424 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 281 344 IPR004827 GO:0003700|GO:0006355
Vra9g0479 424 SMART brlzneu 279 343 IPR004827 GO:0003700|GO:0006355
Vra9g0479 424 PANTHER G-BOX-BINDING FACTOR 3 1 424 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 367 424 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 100 132 - -
Vra9g0479 424 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Vra9g0479 424 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 286 301 IPR004827 GO:0003700|GO:0006355
Vra9g0479 424 MobiDBLite consensus disorder prediction 1 27 - -
Vra9g0479 424 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 424 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vra9g0479 424 MobiDBLite consensus disorder prediction 158 219 - -
Vra9g0479 424 MobiDBLite consensus disorder prediction 202 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0479 Vra-Chr9 4847038 4851468 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0479 1 424 bZIP Transcription Factor Family AT2G46270 49.078 5.52e-107 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra9g0479 MFMR_assoc 3.5e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0479 K09060 - gmx:547789 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0479 9 4847038 4851468 Vra9g0479 9 4847038 4851468 ECH