Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0457 ATGGAAGAGAGTGCGAAGTGTGAGCAAGTTAGTGTCATTGATGAGTTGCTGCTAGGGAAGGAGCTAACAAAGAAGCTTTGTGAACAACTATTCTCGTCTTCCTCTTCCTCATCATCCTCCTCCTCCTCATCTTGTGACACAAATGAGGTCTTGATTGAGAAAATAATCTCCACCATGGAGAAGGCACTTGCCAAGGTGAATTGTATGGCTAATGTAGGAGAAAGTAAGGCCATGATGGATTCCCATTGCTCTTTCACAAATGGTAGTCCCAAAAGTGAGGTCATGGAGCCTGAGGTTGAGCACAAACATGTCTCTAAGAAAAGAAAGACCATGCCAAGGCGGAGAGAGCAAGTGGAGGTGTGCTTGGGAACGGAAGGAAATAAGGAAGATGGCTATAGCTGGAGAAAGTATGGGCAGAAGGACATTCTTGGAGCAAAGTTTCCAAGGGGATATTACAGATGCACATATAGAAACATACAAGGATGTCTGGCCACTAAGCAAGTGCAAAAGTCAGATGAAGATCCAATGATATACGAGATAACATACATAGGAAGACACACATGCACCCAAGCAAGTCACTTGAAAAAGACAGCGGTGCCCCCATCAAAAACCAAGGTGAGAATCGAAGAAAACCAGCACCAAACCAATGAAAAGAATCAACCACAACAAGAGAAAATAGAGCAACCCCCAGAGACTATTTTCTCCTTTGGATCACAAGGTGAAGTTAAAGTAGAGGACTTGGACTTAGAAATTTTCCCATCATTTTGCTTCTCTTCTCCATCAATAGGGTCTGAAAACGATGAAAACAACAACATCTTCCCTTACTCCATGATCGACAACAACTTATTGGAAAGCTTCTCTCCTTCATTCATGTCTACAACAACTTCAGAATCAGACATGTTCTGCAACTGGGAGAGCACTGGACTAGGCCAAAGTGTGCATAACTCCACTTCAGATATCACTGATATAGTTTCCACACCAACTTCAGTCACCTATTCATCAATAATGGACCTTGATATCTTCCTCGATAAGAACGATTTCGACATAGATTTTCCTATGAACACCAGAGAACTTTGCATTTGA 1083 0.4229 MEESAKCEQVSVIDELLLGKELTKKLCEQLFSSSSSSSSSSSSSCDTNEVLIEKIISTMEKALAKVNCMANVGESKAMMDSHCSFTNGSPKSEVMEPEVEHKHVSKKRKTMPRRREQVEVCLGTEGNKEDGYSWRKYGQKDILGAKFPRGYYRCTYRNIQGCLATKQVQKSDEDPMIYEITYIGRHTCTQASHLKKTAVPPSKTKVRIEENQHQTNEKNQPQQEKIEQPPETIFSFGSQGEVKVEDLDLEIFPSFCFSSPSIGSENDENNNIFPYSMIDNNLLESFSPSFMSTTTSESDMFCNWESTGLGQSVHNSTSDITDIVSTPTSVTYSSIMDLDIFLDKNDFDIDFPMNTRELCI* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0457 360 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0457 360 SUPERFAMILY WRKY DNA-binding domain 127 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra9g0457 360 Gene3D WRKY domain 104 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vra9g0457 360 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 1 357 - -
Vra9g0457 360 ProSiteProfiles WRKY domain profile. 123 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0457 360 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 357 IPR044810 GO:0003700
Vra9g0457 360 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vra9g0457 360 MobiDBLite consensus disorder prediction 200 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0457 Vra-Chr9 4431441 4434252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0457 7 295 WRKY Transcription Factor Family AT4G23810 36.000 3.97e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vra9g0457 WRKY 2.2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0457 - - gmx:100170747 476.863