Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0448 ATGCATACAAAGCTGTTAACCCAAATTCGTCTTCTTCATCCCCTTCTTCCCATGAAGCCTCGTACTCTTCCTCTTCTCTCACGCGCCTTCTTCTTCCCTCCCTCCAAGTTTCTCCGAACCGCACCGTTTAAAGCTCGCGCCTTTTCCTCCCGGGCCCACGCTCACGCCCGCGACAAGCTTCCGGTTCGCCCCTCCAAGAGCCTCGTTGACGACGAGGCTGACCTCAGCGACTGGGTCGATGATTTGCGGACCGGCCGTGTCGACCGCTTCTCCCAGCGGTTCAGCAGCGACGAAGATGAAGACCGCAAATTCCGGCCGCCGCCGAGGAACAACAATAGGGCTTCCACCAATTTGGGGAAGAGGAGGGGCGAGGGTTTGCGGATAGGAAGGCAGAATGCGAACGCGAGGAGAAAGATTCGACCAAGGAGTGACGACGATGAGGAAGTGGTGGAGAGTAGAAGGAAGTTCAAAGGTGGTGGCGTTAGAGCGTTTCTCGGCGAAGATGAAAGTGAAGATGAAGAGAGTGATGGTAGTGAGGAGGAGGAGATATTGAACAAGAGTAGAACCGCTTTGTTTGGTCAACAAAACGGTCTGAACCGGAAGACTGTTGAACCGACTCCTAGACCATCTTCTCCTGGAGGTTCTGATTCTTACCTGAGTGAATCAAGATTTGACCAATGTTCAGTCTCCCAGCTGTCACTTAAAGGAGTAAAGGATGCTGGATATGAGAAAATGACAGTTGTGCAAGAGGCTACTCTTCCAGTAATTCTCAAAGGTAAGGATGTCCTTGCCAAGGCCAGGACAGGCACAGGAAAAACAGTAGCATTTTTGCTTCCATCAATTGAAGTTGTGGTGAAGTCACCTCCAAGTGATCATGACCACAGGCGGCCACCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAACTTGCAAGTCAGGCTGCCGCAGAGGCCAATAAACTGCTGAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGCACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAACCCTTGCCAGATCCTTGTTGCTACTCCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTTCAAATAGGCTGATGGGTGTGAAGGTTTTGGTGCTTGATGAAGCTGATCATTTACTTGACATGGGATTTCGCAAAGACATTGAGAGGATAATTGCTGCAGTCCCTAAACAACGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTGCGTCAAGTTTGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAGTTGCCCCATTGGACAAGCATTTCCCTTTACTATATGTTCTTCTGAAGGACCACATTGCAGATGATGTTGATTACAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACTAGACTTGTTGCTGATCTTCTTGGTGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAGGAATTTCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCAGATGTATCTGCTCGTGGAGTTGATTATCCAGATGTCACTCTTGTTATACAGGTTGGTTTGCCCGCAGATAGAGAACAATATATACATCGCTTGGGTAGAACAGGCCGAAGAGGGAAAGAAGGGCAGGGCATACTGCTGCTGGCTCCTTGGGAAGAGTTCTTTTTATCTACTGTAAAAGATTTGCCTATTGAGAAAGCTCCCGTGGTGCCTTCAGTTGATCCTGATACTAAGAGAAAGGTAGAAAAAGCTCTATCCCATGTGGATATGAAGAACAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTATAATTCGAACAAGAAAGTGGGTCGTGACAAGTATAGGCTAGTGGAGCTTGCAAACGAGTTTAGTCGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAGCTGGTCCTTGGCAAGATGGGCCTCAGGAATATCCCTGGTTTACGTGCCAAATAG 2076 0.4711 MHTKLLTQIRLLHPLLPMKPRTLPLLSRAFFFPPSKFLRTAPFKARAFSSRAHAHARDKLPVRPSKSLVDDEADLSDWVDDLRTGRVDRFSQRFSSDEDEDRKFRPPPRNNNRASTNLGKRRGEGLRIGRQNANARRKIRPRSDDDEEVVESRRKFKGGGVRAFLGEDESEDEESDGSEEEEILNKSRTALFGQQNGLNRKTVEPTPRPSSPGGSDSYLSESRFDQCSVSQLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVVKSPPSDHDHRRPPIFVLVICPTRELASQAAAEANKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFSNRLMGVKVLVLDEADHLLDMGFRKDIERIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVQEGTEETHSQVRQMHLVAPLDKHFPLLYVLLKDHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPVVPSVDPDTKRKVEKALSHVDMKNKEAAYQAWLGYYNSNKKVGRDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRAK* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0448 691 MobiDBLite consensus disorder prediction 137 166 - -
Vra9g0448 691 SMART helicmild6 494 575 IPR001650 -
Vra9g0448 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 470 618 IPR001650 -
Vra9g0448 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 253 436 IPR014001 -
Vra9g0448 691 Gene3D - 445 669 IPR027417 -
Vra9g0448 691 MobiDBLite consensus disorder prediction 188 220 - -
Vra9g0448 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 591 IPR027417 -
Vra9g0448 691 MobiDBLite consensus disorder prediction 93 108 - -
Vra9g0448 691 Gene3D - 179 437 IPR027417 -
Vra9g0448 691 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 222 250 IPR014014 GO:0003724
Vra9g0448 691 CDD DEADc_MSS116 229 438 - -
Vra9g0448 691 PANTHER RNA HELICASE 32 140 - -
Vra9g0448 691 PANTHER RNA HELICASE 197 689 - -
Vra9g0448 691 SMART ultradead3 241 454 IPR014001 -
Vra9g0448 691 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 32 140 - -
Vra9g0448 691 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 197 689 - -
Vra9g0448 691 CDD SF2_C_DEAD 451 584 - -
Vra9g0448 691 Pfam DEAD/DEAH box helicase 247 424 IPR011545 GO:0003676|GO:0005524
Vra9g0448 691 MobiDBLite consensus disorder prediction 93 220 - -
Vra9g0448 691 Pfam Helicase conserved C-terminal domain 475 575 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0448 Vra-Chr9 4316641 4322772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0448 222 606 Eukaryotic Initiation Factors Gene Family AT3G19760 28.715 1.12e-46 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0448 - - gmx:100795739 1148.27