Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0442 ATGAGAATCAAAAGGAGGGATGCAGAACTGTGGATGTCCCACCGTATGCTACCTGATTTCCTGAAACAAAGAATCAGACGGTATGAACAATACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTGATTCGCAACCTCCCCAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGTTTAGATCTACTTAAAAAGGTGCCAATGTTCGAGAGCATGGATAATCAGTTGTTGGATGCACTGTGTGATAAACTAAAGCCAGTCCTGTACACAGAGAGAAGTTACATAGTCCGTGAAGGGGATCCAGTTGATGAAATGCTGTTCATCATGCGTGGAAAACTTGCAACTGCCACAACAAATGGTGGAAGAACTGGTTTCTTCAATTCCTCTGAGCTCAAGGCTGGTGATTTCTGCGGAGAAGAGCTTCTGACATGGGCCTTGGACCCCAACTACTCCTCAAATCTACCCATTTCAACTAGAACTGTGGAAACTATATCAGAAGTTGAAGCCTTTGCTCTCATGCCTGAGGACTTGAAAAGTGTTGCTTCCCAATTTCGACGTCTTATAAACAACAAACAACTCCAACACACTTTCAGGTTCTATTCCTTGCAATGGAAGACATGGGGTGCATGTTTCATACAAGCAGCATGGCGTAGATATAGAAAAAAGAAGGCAGAGAGGTTGTTACGTGAAGCAGAAGAAAGGATACAAAATCTGGAAAATGAAGAAGGGTCTTCACCTAGCTTTGCTGCCACTGTATATGCATCAAAGTTTGCAACAAATGCATTGCGCCACCTCCGAAGTGGCAAACGCACCAGAGTGCCACAGCCACAGAAATTGCTACCCCTGATGCCTCAGAAGCCTTCGGAGCCAGATTTCGCTGCTCTGAAAAACTAG 900 0.4444 MRIKRRDAELWMSHRMLPDFLKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFESMDNQLLDALCDKLKPVLYTERSYIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSELKAGDFCGEELLTWALDPNYSSNLPISTRTVETISEVEAFALMPEDLKSVASQFRRLINNKQLQHTFRFYSLQWKTWGACFIQAAWRRYRKKKAERLLREAEERIQNLENEEGSSPSFAATVYASKFATNALRHLRSGKRTRVPQPQKLLPLMPQKPSEPDFAALKN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0442 299 MobiDBLite consensus disorder prediction 267 299 - -
Vra9g0442 299 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 1 297 - -
Vra9g0442 299 Coils Coil 223 246 - -
Vra9g0442 299 ProSiteProfiles cAMP/cGMP binding motif profile. 70 154 IPR000595 -
Vra9g0442 299 CDD CAP_ED 70 202 IPR000595 -
Vra9g0442 299 Pfam Cyclic nucleotide-binding domain 91 184 IPR000595 -
Vra9g0442 299 Gene3D Helix hairpin bin 1 61 - -
Vra9g0442 299 Gene3D Jelly Rolls 68 188 IPR014710 -
Vra9g0442 299 SUPERFAMILY cAMP-binding domain-like 4 188 IPR018490 -
Vra9g0442 299 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 297 - -
Vra9g0442 299 SMART cnmp_10 70 201 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0442 Vra-Chr9 4246171 4247998 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0442 1 295 Ion Channels AT4G01010 69.900 5.12e-148 430
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0442 K05391 - vra:106773125 573.548