Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0440 ATGGCAATGCATGCATCTGGCATCCTTTTGGTTGTTCTTTATTCTCTGTTGAGGTTTGCATTGTCGGATATCAATTTTGTAAAATATGATTTTCGGCAACCAGGCTTGAAAATGGATGGAGCTTATGTGAGGCCGAATGGCATACTTACCTTGACAAATGATTCTGCAAAAATCTTTGGCCATGCATTCTATCCATCTCCTTTGCCATTCAAATCTAGCAAAAACAAATCCATTGTTGCAACCTTTAGCACTACCTTTGTGTTTTCCATAGTTCCTAAGTACCCAGATCTTGGAGGACACGGTTTTGCATTCGTCCTAATATCTACCAACGAACCAAAAGGGTGCCTCACAAATCAATATTTAGGCCTCCCAAATGAGACAAGTAATAAGGAACTTTCAACCCCGTTCCTAGCTGTAGAGTTTGATGGGGTACAGAACCTTGAACTTGAAGACATCGATGATAATCACGTGGGGATAGATATATCCAGCCTCATCTCTAACACATCTAAGTCAGTAGCATACTATTTAGAAAGAAATGGCCAAGAAGATCACAGCAAGAACATTTCCTTCAGCTTGAAGAGTGGAAAACCCATTCAAGCATGGGTTGATTACAATGAAGGGGAGATGATGATGCATGTCACAGTTTCTCCTTTTGGCATGCCAAAGCCATATTTTCCTTTGATATCATTTCGCATAGACCTATCCTTGGTGTTTGATGATTACATGTATGCAGGTTTTTCTGCTTCCAACGGTCTGCTGGTAGCTGAGTATAATATACATGGTTGGAGCTTCAAAATAGGAGCAGCAGCACAAGAGCTAGAAAAATCAGCTGTGCCACTTATTCGGTCAAATACTTCTATTAAGGTGGTGCACAAAAAACACTTTGCAGCAGGTATTACTCTAGCAAGTGCATCTCTTTTTATATTGACAATTATAGGAGCTCTAGCCCTGCACAGATTAAGAAATAGAGAGGAGGTTTTAGAGGATTGGGAACTCGAATTTGCCACCCATAAATTTAAATATTCTGAGCTCCATTCAGCTACAGGAAAGTTTGGGGACAGAAACCTTATTGGGTATGGAGGTTTTGGTAAAGTCTACAGAGGTTTAATCCCTAGCACAGGACTAGAAGTAGCCGTAAAGCGGGTTGCTCCTGATTCAAGGCAGGGGATCAGAGAATTTGTAGCGGAAATAACAAGCATGACACAGCTTAAGCATAGAAATTTGGTGCAATTACATGGGTGGTGCAGGAAGCAGGATGAACTCCTCATTGTGTATGATTATCTACCAAATGGAAGCCTAGACAAGCTTCTGTTTGAAAATGATCATCAAAAGAAGAAATTACTAACTTGGGATCAAAGATACAAGATCATAACTGGAGTTGCCCAAGGGCTGCTGTATCTCCATGAAGAAAGTGAGGTGCAGGTTGTTCACAGAGATGTAAAGCCAAGCAATGTCCTGATAGATGCAGATCTCCAACCAAAGCTTGGAGATTTTGGTCTTGCAAGGACTTACGAGCATGGAATCAATCCACAGACAACAAGCATTGTGGGAACACTAGGCTACATGGCCCCTGAGCTCACCAAGACTGGGAAAGCAAGAACAAGCACAGATGTATATGGGTATGGAGTACTCATTTTGGAAGTAGCATGTGGAAGGAGGCCAATAGAGCCCCAAAAGAATCCCGAGGAACTGGTATTGGTAGATTGGGTTAGAGATCTACATCACCAAGGACAGATCTGCAGAGCTATTGACCCCAGTTTATATGAGTATGACAAAGATGAAGCTCAGCTTGTGCTTAGTCTTGGATTGCTTTGCTCTCATCCCAATCCTCATTACAGACCTAATATGAGAATGATTGTCCAGTTCCTTATGGGAGAAATTATCCTTTCTCCACTTCCTCCTGACATTCACAGTGAAGGTCCAAGAGAAATAGCAAAATGTCCCTGCAACTTTCCATATAATTCTCAACCTTCAAGTTCTATGGTGTCTTCGTCAAACTATTGTAGTCTTACATGCTTTGATGAGGTGGTCTACCCTGCCGAACTCACTGGTAACACTTCATAG 2064 0.4167 MAMHASGILLVVLYSLLRFALSDINFVKYDFRQPGLKMDGAYVRPNGILTLTNDSAKIFGHAFYPSPLPFKSSKNKSIVATFSTTFVFSIVPKYPDLGGHGFAFVLISTNEPKGCLTNQYLGLPNETSNKELSTPFLAVEFDGVQNLELEDIDDNHVGIDISSLISNTSKSVAYYLERNGQEDHSKNISFSLKSGKPIQAWVDYNEGEMMMHVTVSPFGMPKPYFPLISFRIDLSLVFDDYMYAGFSASNGLLVAEYNIHGWSFKIGAAAQELEKSAVPLIRSNTSIKVVHKKHFAAGITLASASLFILTIIGALALHRLRNREEVLEDWELEFATHKFKYSELHSATGKFGDRNLIGYGGFGKVYRGLIPSTGLEVAVKRVAPDSRQGIREFVAEITSMTQLKHRNLVQLHGWCRKQDELLIVYDYLPNGSLDKLLFENDHQKKKLLTWDQRYKIITGVAQGLLYLHEESEVQVVHRDVKPSNVLIDADLQPKLGDFGLARTYEHGINPQTTSIVGTLGYMAPELTKTGKARTSTDVYGYGVLILEVACGRRPIEPQKNPEELVLVDWVRDLHHQGQICRAIDPSLYEYDKDEAQLVLSLGLLCSHPNPHYRPNMRMIVQFLMGEIILSPLPPDIHSEGPREIAKCPCNFPYNSQPSSSMVSSSNYCSLTCFDEVVYPAELTGNTS* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0440 687 Gene3D Phosphorylase Kinase; domain 1 335 427 - -
Vra9g0440 687 ProSitePatterns Serine/Threonine protein kinases active-site signature. 475 487 IPR008271 GO:0004672|GO:0006468
Vra9g0440 687 SUPERFAMILY Protein kinase-like (PK-like) 334 661 IPR011009 -
Vra9g0440 687 CDD STKc_IRAK 357 625 - -
Vra9g0440 687 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 269 IPR013320 -
Vra9g0440 687 ProSiteProfiles Protein kinase domain profile. 351 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0440 687 Pfam Legume lectin domain 35 277 IPR001220 GO:0030246
Vra9g0440 687 ProSitePatterns Protein kinases ATP-binding region signature. 357 380 IPR017441 GO:0005524
Vra9g0440 687 PANTHER - 58 663 - -
Vra9g0440 687 Gene3D - 22 287 - -
Vra9g0440 687 CDD lectin_legume_LecRK_Arcelin_ConA 25 266 IPR001220 GO:0030246
Vra9g0440 687 Gene3D Transferase(Phosphotransferase) domain 1 428 627 - -
Vra9g0440 687 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE IV.2-LIKE 58 663 - -
Vra9g0440 687 SMART serkin_6 351 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0440 687 Pfam Protein kinase domain 355 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0440 Vra-Chr9 4220022 4222085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0440 21 623 Receptor kinase-like Gene Family AT3G55550 46.875 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra9g0440 Pkinase 1.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0440 - - gmx:100801966 1117.45