Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0434 ATGATGAGCAACAAGGAGCGAGTTCCATCTTTAATATGCTTGTATATTCTGTTTTGGGTCGTTCTTCACTTGGTGCTCAGGGTTTCTGGAAATGCAGAAGGTGATGCCCTTACAGTATTCAAGAACAATGTCATAGATCCTACTGATGCTCTTCGTAATTGGAATCCTAATATTTTAACTCCTTGCACATGGTTTCATGTTACTTGTAACGGTGAAAGTAGCGTAACCCGTTTGTATCTTGGAAATACCAACCTTTCGGGTCAACTTGTTCCAGAGCTTGGCCAGCTCCCAAATTTGGAATATCTGGAACTTCATAACAATAATATAACTGGGGAGATCCCAAATGTGCTTGGAAATTTGACAAACTTGCTGAGTTTGGATCTTTACTCGAACAAGATTACTGGTCAAATTCCAGAAGAATTAGGCAATCTTAAAAAACTACAATCCCTTTTTAGCAATAATACTCACTTGGTGCAAGCCATTGCAATTTCACCACCCGCCACACAGAAACAAAATCCTTCAGGTAATAGTTTCAGATCTATTGGAGTCATTGCTGGAGGAGTTGCTGTAGGCGCTGCACTTTTGTTTGCAGCTCCAGTAATTGCATTTGTTTACTGCAAAAGAAGGAAGCCACCAGATTATTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTAACTTTGGTCAACTTAAAAGGTTTTCGCTGCATGAACTGCTAGTTGCAACAGATGGCTTTAATAACAAAAATATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGTGATCTAGTTGCAGTAAAAAGACTTAACCAAGAACGTATCCGGAGTGAGGAGAAACAATTTCAAACAGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGATTGGTTTTTGTATGACAACTACTGAAAGATTGCTTGTGTATCCTTTCATGGTTAATGGAAGTGTAGATTCATGTTTACGAGATCGACCAGAATCACAACCACCACTTCAATGGCTTGTTCGGAAGCGTATTGCTCTGGGAGCAGCTAGGGGGCTTGCTTATCTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATATCAAAGCTGCTAATATATTATTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTTATGGATTACAGAAATACTCATGTTACTACTGCTGTACGTGGGACACTTGGCCATATACCACCAGAGTATCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAGATAATAACTGGACAGAGGGCTTTCAATTTAGCACGACTTGCCATTAATGATGAGGTTATGTTGCTTGAATGGGTGAAAGCACTTCTGAAGGAGCAGAAGTTAGAGACACTGGTGGATGCAGATTTACAGGGAGATTATGATGAGGGTGAACTAGAGAAGTTAATTCAAATAGCTTTGCTATGCACCCAAAGTTCCCCTTTGGATAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAAGGCCAAGGTTTGGAAGAAAAGTGGGACCAATGGGGGAAGAAAGAGGATATGATCCAAAAAAATTACAACCCCTTCAATCTCTACGTTGCTTATGACTCAACTTCAAATATTCCACCAGATGAACTGTCTGGTCCTAGATGA 1704 0.4049 MMSNKERVPSLICLYILFWVVLHLVLRVSGNAEGDALTVFKNNVIDPTDALRNWNPNILTPCTWFHVTCNGESSVTRLYLGNTNLSGQLVPELGQLPNLEYLELHNNNITGEIPNVLGNLTNLLSLDLYSNKITGQIPEELGNLKKLQSLFSNNTHLVQAIAISPPATQKQNPSGNSFRSIGVIAGGVAVGAALLFAAPVIAFVYCKRRKPPDYFFDVAAEEDPEVNFGQLKRFSLHELLVATDGFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLNQERIRSEEKQFQTEVEMISMAVHRNLLRLIGFCMTTTERLLVYPFMVNGSVDSCLRDRPESQPPLQWLVRKRIALGAARGLAYLHDHCDPKIIHRDIKAANILLDEDFEAVVGDFGLAKLMDYRNTHVTTAVRGTLGHIPPEYLSTGKSSEKTDVFGYGVMLLEIITGQRAFNLARLAINDEVMLLEWVKALLKEQKLETLVDADLQGDYDEGELEKLIQIALLCTQSSPLDRPKMSEVVRMLEGQGLEEKWDQWGKKEDMIQKNYNPFNLYVAYDSTSNIPPDELSGPR* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0434 567 Pfam Protein kinase domain 247 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0434 567 Pfam Leucine Rich repeats (2 copies) 97 134 IPR025875 -
Vra9g0434 567 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 164 567 - -
Vra9g0434 567 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 28 162 - -
Vra9g0434 567 SUPERFAMILY Protein kinase-like (PK-like) 227 522 IPR011009 -
Vra9g0434 567 SMART serkin_6 246 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0434 567 Gene3D Transferase(Phosphotransferase) domain 1 323 540 - -
Vra9g0434 567 ProSitePatterns Protein kinases ATP-binding region signature. 252 274 IPR017441 GO:0005524
Vra9g0434 567 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Vra9g0434 567 ProSiteProfiles Leucine-rich repeat profile. 98 121 IPR001611 GO:0005515
Vra9g0434 567 ProSiteProfiles Protein kinase domain profile. 246 525 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0434 567 Gene3D Phosphorylase Kinase; domain 1 215 322 - -
Vra9g0434 567 SUPERFAMILY L domain-like 33 161 - -
Vra9g0434 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 369 381 IPR008271 GO:0004672|GO:0006468
Vra9g0434 567 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vra9g0434 567 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1-RELATED 28 162 - -
Vra9g0434 567 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1-RELATED 164 567 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0434 Vra-Chr9 4131796 4137493 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0434 10 567 Receptor kinase-like Gene Family AT1G71830 57.600 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra9g0434 Pkinase 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0434 K13416 - gmx:100804180 753.436