Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0433 ATGAAGCAAGTGATTTCATCTTTCTGGTGTTTGTTTCTTCTTTGTGCATTTTTGGTGCTTGACTTCATGGTCAAGGTTTCTGGCAACCAAGAAGGTGATGCCCTGTCTGCATTGAGGGGAAATATGAATGATCCCAATAATGTTCTTCAAAGTTGGGATTCTACTCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAATGACAATAGCGTGATCCGTGTTGATCTTGGAAATGCAAACCTTTCGGGTGAGCTCGTTGCACAGCTTGGTCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAATTGAGCTTGGAAGTTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAACATTACTGGTCAAATTCCAGTCGAATTAGCCAACCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGAAAAATTCCTATGTCTCTGACCAATGTTGATAAACTACAAGTGCTCGATTTATCGAAGAACAACTTAACAGGAGATGTACCAATCAACGGTTCTTTTTCATATTTCACTCCCATCAGTTTTAGGAATAACCCCCTATTGAATAATATAGACACTCAATCTCCACCAGCTGCTGCACCACCAGCAAGTTCTTCAGGTAAGAATAACCGTGTTATTGGAATCATTGCTGGAGCAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTGATTACACTTGTTTATTGTAAAAGAAGGAAACCACAGGACTTTTTCTTTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAGAAGGTTTTCATTGCGTGAACTGCAAGTTGCAACAGATAGCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGAACCCAGGGTGGGGAGATGCAATTTCAAACTGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATTTGCTTCGCCTGCATGGTTTTTGCATGACACCTACTGAACGTTTGCTTGTGTACCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCGGAAGCACAACCACCACTTGAATGGTCAAAACGGAAGGGTATTGCTCTAGGAGCTGCAAGGGGACTTGCTTATTTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTAATGGATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATTGGCCACATTGCTCCTGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTGAAAGCACTATTGAAAGAAAAGAGGTTGGAGACACTGGTGGATGCAGATTTGGATGGAAAATATGGGGAGGAGGAAGTAGAAGAGTTGATCCGAGTGGCCTTGCTATGCACACAAAGCTCCCCTTTCGAAAGACCAAAGATGTCTGAGGTAGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAAAAAGAGGATATGATCCAACAAAATTTTGACCCCTCCAGTCTCCACCATGCTTACTGGCCATTATTAGACTCATCTTCAAATATTCCCCCAGATGAACTGTCAGGGCCTAGATGA 1857 0.4157 MKQVISSFWCLFLLCAFLVLDFMVKVSGNQEGDALSALRGNMNDPNNVLQSWDSTLVNPCTWFHVTCNNDNSVIRVDLGNANLSGELVAQLGQLPNLQYLELYSNNITGKIPIELGSLTNLVSLDLYSNNITGQIPVELANLKKLRFLRLNNNSLSGKIPMSLTNVDKLQVLDLSKNNLTGDVPINGSFSYFTPISFRNNPLLNNIDTQSPPAAAPPASSSGKNNRVIGIIAGAVAVGAALLFAAPVITLVYCKRRKPQDFFFDVAAEEDPEVHLGQLRRFSLRELQVATDSFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTPTERLLVYPFMVNGSVASCLRDRPEAQPPLEWSKRKGIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKALLKEKRLETLVDADLDGKYGEEEVEELIRVALLCTQSSPFERPKMSEVVRMLEGEGLAEKWEKWWQKEDMIQQNFDPSSLHHAYWPLLDSSSNIPPDELSGPR* 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0433 618 Pfam Protein kinase domain 294 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0433 618 Gene3D Ribonuclease Inhibitor 27 210 IPR032675 -
Vra9g0433 618 Pfam Leucine rich repeat 95 155 IPR001611 GO:0005515
Vra9g0433 618 ProSiteProfiles Protein kinase domain profile. 293 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0433 618 Gene3D Phosphorylase Kinase; domain 1 262 369 - -
Vra9g0433 618 ProSitePatterns Protein kinases ATP-binding region signature. 299 321 IPR017441 GO:0005524
Vra9g0433 618 SMART serkin_6 293 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0433 618 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Vra9g0433 618 PANTHER BNAA08G11770D PROTEIN 11 618 IPR031048 GO:0004675|GO:0005102|GO:0006468
Vra9g0433 618 SUPERFAMILY Protein kinase-like (PK-like) 273 568 IPR011009 -
Vra9g0433 618 SUPERFAMILY L domain-like 30 205 - -
Vra9g0433 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Vra9g0433 618 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 618 - -
Vra9g0433 618 Gene3D Transferase(Phosphotransferase) domain 1 370 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0433 Vra-Chr9 4114574 4121550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0433 10 618 Receptor kinase-like Gene Family AT4G33430 72.036 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vra9g0433 Pkinase 5.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0433 K13416 - gmx:100804180 1042.34