Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0428 ATGGATGCTTTATCTTTAAGTTCAAGTTCAAGCCTAAACATGTGCAAGCCCTTTCAATCTCATGGTCTTTCACTCTCTAAGCAGCAAAGAGTTTCCACTGTGAAGTTTGGTACTGTTTCATGCAGAGCCACAACCCAAGAAAATTTGTACAAGTTACTGTCTGTGAGTCCGGAAAGAGCAACAATGGATGAGATTAAGAGGGCTTATAGATCTATGGCTCTTAGGTACCACCCTGATGTGTGCCACGATCCCACCATGAAAGAGGAGTCAACGAGGCTGTTTGTGCTGGTGAATGCAGCTTACAAGACCTTGTCCAATCCAAGGCTTCGAGAACAGTACGACAGTGAATTGGGTCTGAGAAGCAAAGTCATGAGTGGTGGCAGTGATCATGAAAGATGGGGAAGTGTGGGTGTTTGTAGTGATTTTGAGAGATGGGGTAGTAAGTTTCAGGAGGAAGTGATTGAGGTGAAGACAAGGTCTCGTAGACGAATGGGACAAAAGGGAGGATCATCAGCTACCAGAATGAGAACACAAAACATGAAAGACAGACATTGA 555 0.4432 MDALSLSSSSSLNMCKPFQSHGLSLSKQQRVSTVKFGTVSCRATTQENLYKLLSVSPERATMDEIKRAYRSMALRYHPDVCHDPTMKEESTRLFVLVNAAYKTLSNPRLREQYDSELGLRSKVMSGGSDHERWGSVGVCSDFERWGSKFQEEVIEVKTRSRRRMGQKGGSSATRMRTQNMKDRH* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0428 184 Pfam DnaJ domain 48 114 IPR001623 -
Vra9g0428 184 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 5 183 - -
Vra9g0428 184 SMART dnaj_3 47 109 IPR001623 -
Vra9g0428 184 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 5 183 - -
Vra9g0428 184 MobiDBLite consensus disorder prediction 158 184 - -
Vra9g0428 184 Gene3D DnaJ domain 35 132 IPR036869 -
Vra9g0428 184 PRINTS DnaJ domain signature 51 69 IPR001623 -
Vra9g0428 184 PRINTS DnaJ domain signature 69 84 IPR001623 -
Vra9g0428 184 PRINTS DnaJ domain signature 89 109 IPR001623 -
Vra9g0428 184 SUPERFAMILY Chaperone J-domain 43 113 IPR036869 -
Vra9g0428 184 CDD DnaJ 48 106 IPR001623 -
Vra9g0428 184 ProSiteProfiles dnaJ domain profile. 48 117 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0428 Vra-Chr9 4086963 4087772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0428 50 124 C2H2 Transcription Factor Family AT1G74250 36.364 5.53e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0428 - - gmx:100811478 280.411