Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0416 ATGTCTCACTTCGGACGCTCGGGTCCTCCTGACATTTCCGACACTTACTCTCTTCTCGTTCTCAACATCACCTTCCGTACCACCGCCGATGACCTATTTCCTCTATTTGACAAGTATGGGAAGGTTGTCGACATCTTCATCCCCAAGGATCGAAGGACCGGTGAGTCGAGGGGTTTTGCCTTTGTGCGTTACAAGTATGCTGATGAGGCTCAAAAGGCCGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACGGTCCAGTTTGCCAAATACGGGCCTAATGCTGAGAGGATTCACAAAGGAAGGATTATTGAAACGGCCCAGAGATCAAGGCACCGGTCAAGAAGCCGTAGTCCCAGGAAAAGGTATCGTGATGACAGAGACCGGGATTATAGAAAGAGAAGTCGCAGTAGAAGCTATGATAGGTATGAACGTGACAAGCACCGTGGGAGAGACAAAGACTATCACCACAGAAGCAGAAGCCGTAGTACCAGTCTTGATTACAAGGGTCGTGGTAGGGCACGCTATGATGATGAACATCATAGTAGAAGCCGCAGTAGATCAGTTGACAGTCGCTCCCCTGCACGACGCAGTCCTAGTCCTCGAAAGAGTCCTTCCTTACAGCGGAGCACTTCTCCACAAAGGAGTACATCCCCTAGGAAAAGCCCACGGGGTGAAAGTCCAGCAAATCGTAGCCGTGATGGACGTTCTCCTTCCCCGCGCAGTGTATCACCACGCGGTCGCCCTGAAGTTTCACGAAGCCCTTCCCCTCGGAATTCGAATGGTGATGAATAA 804 0.5075 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEAQKAVDRLDGRMVDGREITVQFAKYGPNAERIHKGRIIETAQRSRHRSRSRSPRKRYRDDRDRDYRKRSRSRSYDRYERDKHRGRDKDYHHRSRSRSTSLDYKGRGRARYDDEHHSRSRSRSVDSRSPARRSPSPRKSPSLQRSTSPQRSTSPRKSPRGESPANRSRDGRSPSPRSVSPRGRPEVSRSPSPRNSNGDE* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0416 267 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Vra9g0416 267 SMART rrm2_1 17 90 IPR003954 GO:0003676
Vra9g0416 267 SMART rrm1_1 17 90 IPR000504 GO:0003723
Vra9g0416 267 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 267 - -
Vra9g0416 267 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Vra9g0416 267 MobiDBLite consensus disorder prediction 102 267 - -
Vra9g0416 267 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 267 - -
Vra9g0416 267 MobiDBLite consensus disorder prediction 196 228 - -
Vra9g0416 267 MobiDBLite consensus disorder prediction 124 195 - -
Vra9g0416 267 Gene3D - 4 103 IPR012677 -
Vra9g0416 267 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0416 Vra-Chr9 3837884 3840923 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0416 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 35.000 5.34e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0416 K12891 - gmx:100778928 348.591