Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0413 ATGGATTCTGCATTCTCCGTCACCACGACGGCGCACATGGCGTTTTTCAGAGTGCTCCACCGTCATTTTGCCGGCGCTCCTCAACGCACCTTCGTCCGCCGCAACCTCAGATGCCTCGTTGCTTCCTACAACAACTGCTGCCGCATTCCATGTTCTTTTACTTCCGCACCGTCGCCGTCCTCGCTCCGCTGCTTCGGCGGATTGCTCCAGCGAAAGCCGTGCCGACTCCGCTGCATTTCGAGCTCCGCCGCTTCCTGTGCTTCTTCCACCGGCGGTGGAAATGGAGGCGGTGGAATCGGTGACAACGGCGGTTCTGGCGGTTCTGGCGGTGAGTCTGGTGATGCTAATCTCCAATTGGTTGGTGACGCGTCACAGGAGCTTTCGGCACTTTCGCCTGACGTTATCATTCTCGATGTTTCAGGAATGGTGTGCGGGGGATGTGCGGCGACTGTGAAAAGGATACTGGAAAATCGACCACAGGTGTCATCAGCTAGTGTAAATTTAACAACAGAAACAGCAATCGTTTGGCCTATATCTGAAGCAAAGAATGGACCAAATTGGCAAAAGCAATTAGGGGAGGCACTTGCAGAGCATTTAACCAGTTGTGGTTACAATTCTAGCCTCCGAGATTCTACAAGAGAGAATTTCCTCCAAATTTTTGAAAGGAAGATGGAGGAAAGACATAGACAATTAAGAGAAAGTGGTCGTGAACTAGCAGTTTCTTGGGCTCTATGTGCTGTCTGTCTTGTTGGCCATTTCTCTCATTTCTTTGCAGCAAAGGCACCGTGGATCCATGTCTTTCATTCCATTGGGTTTCATCTATCGTTATCTTTGTTTACATTGCTTGGTCCTGGCCGCCAGCTTATCCTTGATGGTTTAAAAAGCCTTCTTAAATCAACACCAAACATGAACACCTTAGTTGGTCTTGGGGCTTTGTCTTCATTTACTGTCAGCTCATTTGCTGCCTTAGTTCCAAAATTGGGATGGAAGGCTTTCTTTGAGGAGCCAATTATGCTAATTGCATTTGTGTTGCTAGGAAGGAATCTCGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGGCAGGACTTCTTAGTTTGTTGCCACCAAAAGCTCGCCTTCTAGTTAACAATGAGGAAACAGAGGATGGCTCAGTTGTTGAAGTTCCTTCTGAAAGTCTTTCTGTTGGAGACCAAATTATTGTGCTGCCTGGAGACCGTATTCCAGCTGATGGAGTTGTGAGAGCTGGTAGAAGCACTGTAGATGAATCAAGTTTCACTGGTGAACCACTGCCTGTAACAAAAGTGCCTGGGAGTGAGGTAGCAGCTGGTAGTATAAATCTTAACGGAACTCTTACAATGGAAGTGCAACGACCAGGTGGCGAAACTTCTATGGCAAACATTGTTCGTCTGGTTGAAGAGGCACAAAGTAGGGAGGCTCCTGTACAACGGTTGGCAGACAAGGTGGCTGGACATTTCACTTATGGAGTGATGGCAGCCTCTGCTGCTACTTTCACATTCTGGAGTCTGTATGGGGCACACATTTTGCCTCCTGCTTTATATCAAGGAAATTCAGTTTCACTGGCTTTGCAGCTTGCTTGCAGCGTTCTGGTTGTTGCTTGTCCATGTGCACTTGGGTTAGCCACACCTACTGCAGTGCTGGTTGGAACATCTCTGGGGGCTAAAAGAGGTTTACTTCTACGTGGTGGAAACATTCTAGAGAAGTTTGCAATGGTAAACACTGTTGTGTTTGACAAAACAGGGACCCTCACAATTGGTAGACCTGTTGTGACAAACATTGTCACTGCGCCATGCATGAAAAATGCTATTTCAAGCGAAACTGAAGAAAATGCTTTGTCTGATATTGAAGTTCTAAGGCTAGCAGCTGCAGTAGAATCGAATTCCATACATCCAGTTGGTAAAGCGATTGTGGATGCTGCTGTGGCTGTTAATTGTCATAATGCTAAGGTAATAGATGGAACATTCCTGGAAGAACCTGGGTCTGGTGCTGTGGCAACAATTGATAACAAAAAGGTTTCGGTTGGTACATTGGAATGGATCACCAGGCATGGAGTTATTGACAGTTTAGATCAAGAAGTGGAGAAATATAATAATCAATCCTTTGTCTATGTTGGAATTGACGATACTTTAGCTGGCCTAATTTATTTTCAAGATGAGATAAGGGAAGATGCAAGAGACGTTGTTGACAGATTGTCAAAGCAAAATCTAGATATATACATGCTATCAGGAGACAAGAAGAATGCTGCTGAGCATGTTGCTTCTCTTGTTGGAATTCCCAAAGATAAGGTGCTATCTGAAGTGAAACCAGATGAGAAAAAGAAGTTCATAAATGAACTACAGAAAGATAAGAACATTGTTGCTATGGTTGGTGATGGAATTAACGATGCAGCTGCCTTGGCTTCTTCACATGTTGGTATTGCATTAGGTGGAGGTGTCGGGGCTGCTAGTGAGGTGTCTTCTATTGTATTAATGCGCAACCAGCTATCACAGCTACTTGATGCATTGGAGCTTAGCAGGCTGACCATGAATACTGTAAAGCAGAATCTTTGGTGGGCTTTCGTCTATAACATTGTAGGAATTCCAATTGCAGCTGGAGCGTTATTTCCCATAAATGGAACTATTCTGACTCCATCAATTGCTGGGGCTCTCATGGGGCTGAGTTCCATTGGTGTAATGACCAACTCGTTACTTTTGAGATTAAAATTTTCCTCAAAGCAGAAACAAATATATAGTACATCGCCATATACCAAAGTCCATGTGGATTCTGATCTGGCACAACAAAACCAGAAAACAAGCCGACCATACTAG 2829 0.4496 MDSAFSVTTTAHMAFFRVLHRHFAGAPQRTFVRRNLRCLVASYNNCCRIPCSFTSAPSPSSLRCFGGLLQRKPCRLRCISSSAASCASSTGGGNGGGGIGDNGGSGGSGGESGDANLQLVGDASQELSALSPDVIILDVSGMVCGGCAATVKRILENRPQVSSASVNLTTETAIVWPISEAKNGPNWQKQLGEALAEHLTSCGYNSSLRDSTRENFLQIFERKMEERHRQLRESGRELAVSWALCAVCLVGHFSHFFAAKAPWIHVFHSIGFHLSLSLFTLLGPGRQLILDGLKSLLKSTPNMNTLVGLGALSSFTVSSFAALVPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMAGLLSLLPPKARLLVNNEETEDGSVVEVPSESLSVGDQIIVLPGDRIPADGVVRAGRSTVDESSFTGEPLPVTKVPGSEVAAGSINLNGTLTMEVQRPGGETSMANIVRLVEEAQSREAPVQRLADKVAGHFTYGVMAASAATFTFWSLYGAHILPPALYQGNSVSLALQLACSVLVVACPCALGLATPTAVLVGTSLGAKRGLLLRGGNILEKFAMVNTVVFDKTGTLTIGRPVVTNIVTAPCMKNAISSETEENALSDIEVLRLAAAVESNSIHPVGKAIVDAAVAVNCHNAKVIDGTFLEEPGSGAVATIDNKKVSVGTLEWITRHGVIDSLDQEVEKYNNQSFVYVGIDDTLAGLIYFQDEIREDARDVVDRLSKQNLDIYMLSGDKKNAAEHVASLVGIPKDKVLSEVKPDEKKKFINELQKDKNIVAMVGDGINDAAALASSHVGIALGGGVGAASEVSSIVLMRNQLSQLLDALELSRLTMNTVKQNLWWAFVYNIVGIPIAAGALFPINGTILTPSIAGALMGLSSIGVMTNSLLLRLKFSSKQKQIYSTSPYTKVHVDSDLAQQNQKTSRPY* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0413 942 CDD HMA 137 204 IPR006121 GO:0046872
Vra9g0413 942 PRINTS Copper-transporting ATPase signature 288 307 - -
Vra9g0413 942 PRINTS Copper-transporting ATPase signature 336 355 - -
Vra9g0413 942 PRINTS Copper-transporting ATPase signature 566 581 - -
Vra9g0413 942 PRINTS Copper-transporting ATPase signature 773 790 - -
Vra9g0413 942 SUPERFAMILY Calcium ATPase, transduction domain A 382 472 IPR008250 -
Vra9g0413 942 Pfam haloacid dehalogenase-like hydrolase 579 808 - -
Vra9g0413 942 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Vra9g0413 942 PRINTS P-type cation-transporting ATPase superfamily signature 583 597 - -
Vra9g0413 942 PRINTS P-type cation-transporting ATPase superfamily signature 719 730 - -
Vra9g0413 942 PRINTS P-type cation-transporting ATPase superfamily signature 741 751 - -
Vra9g0413 942 PRINTS P-type cation-transporting ATPase superfamily signature 796 815 - -
Vra9g0413 942 PRINTS P-type cation-transporting ATPase superfamily signature 819 831 - -
Vra9g0413 942 CDD P-type_ATPase_HM 238 904 - -
Vra9g0413 942 ProSitePatterns E1-E2 ATPases phosphorylation site. 585 591 IPR018303 -
Vra9g0413 942 ProSitePatterns Heavy-metal-associated domain. 139 168 IPR017969 GO:0046872
Vra9g0413 942 Pfam Heavy-metal-associated domain 137 175 IPR006121 GO:0046872
Vra9g0413 942 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 303 905 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra9g0413 942 Gene3D - 134 211 - -
Vra9g0413 942 Gene3D - 594 727 IPR023299 GO:0000166
Vra9g0413 942 TIGRFAM ATPase-IB1_Cu: copper-translocating P-type ATPase 285 906 - -
Vra9g0413 942 MobiDBLite consensus disorder prediction 89 115 - -
Vra9g0413 942 Gene3D - 574 846 IPR023214 -
Vra9g0413 942 SUPERFAMILY HAD-like 581 903 IPR036412 -
Vra9g0413 942 SFLD Haloacid Dehalogenase 566 846 - -
Vra9g0413 942 Gene3D - 354 476 - -
Vra9g0413 942 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 633 877 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0413 942 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 341 604 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0413 942 SUPERFAMILY HMA, heavy metal-associated domain 135 206 IPR036163 GO:0046872
Vra9g0413 942 ProSiteProfiles Heavy-metal-associated domain profile. 134 208 IPR006121 GO:0046872
Vra9g0413 942 Pfam E1-E2 ATPase 367 563 - -
Vra9g0413 942 SFLD p-type atpase 566 846 IPR044492 -
Vra9g0413 942 PANTHER ATP7, ISOFORM B 111 907 - -
Vra9g0413 942 SUPERFAMILY Calcium ATPase, transmembrane domain M 333 884 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0413 Vra-Chr9 3773842 3809173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0413 285 906 Primary Pumps ATPases AT1G63440 39.812 1.07e-125 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0413 K17686 - gmx:100796210 1592.4