Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0406 ATGGCGGAGCGTGGTTCTTACGGATTGGGACCTCGATTAGATCTTCAGCAACTACAACTTGAAGCCCAGAATAGGTGGTTGCGCCCTGCAGAAATATGTGAAATTCTTTGCAATTATCGGATGTTTCATATCACTTCAGAACCACCTAACAGGCCACCAAGTGGCTCGCTTTTTCTCTTTGATCGGAAGGTTTTAAGGTACTTCAGAAAAGATGGACATAATTGGAGAAAGAAAAAAGATGGAAAGACTGTGAAGGAAGCTCATGAAAAGTTGAAGGTGGGAAGTGTTGATGTGTTACACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAGAGGCGAAGCTATTGGATGCTTGAACAGGATATGATGCATATAGTATTTGTGCACTACTTGGATGTTAAGGTTAACAAAACCAATGTTGGTGGAAAAACATATTCTGGGGAGGCCACCTCAGATTCCCAGAAGGGAAGTTCTTTGTCATCTGGCTTTCCTAGAAATTATGGTAGTGTGCCTTCAGGAAGTACAGATTCCATGAGCCCAACCAGCACTCTGACGTCTTTATGTGAAGATGCCGATTCAGAGGATATTCATCAAGCCAGTTCAGGATCACAATCCTATCATGAAGCAAAATGTTTGGGGAATGATTGCCCTATCGATAAGATTGATGCTCGTTCAAATAGTTCATATCTTATGCATCCATCTTCAGGTGATCATGGACAGTTTCCAGTTCCTGGATCAGAATATATTCCACTTATTCAGGGTCATAGAGCACACGACATTGCATCATGGGACAATGCCATGGAGCAGTCTTCAGGAAAGGATACTGCTCCTTCTCTTGTATCATCTACATCCATTCCACCAAGTACATCAGGAAACATCCTTGAAGAAAACAATGCTGTTCCAGGCAACCTTTTAGGGCGTAAAAATGTCCTCATTGAAGAGGAAAGGGTCTCTCAGGCTCTCCATTCAAATTGGCAGATTCCTTTTGGGGACGATACTGGAGAATTACCTAAGTGGAGCCTTACCCAATCATTAGGTTTGGAATTTGGATCTGATTATGGCACTAGTTTACTGGGGGATGTAACTGATAATGCAGGCTCAGAAATTCTTGCTGAGATGTTCACTTTTAATGGTGAGTTAAAAGAGAAGTCTGTGCACCAAAACATCTCAAAGCAGTATACAAATACACCGTCTCAACCTGCAACAAAATCCAATTCTGATTATGAAGTGGCTGGTGAAGCAAGTATTAATTATACCTTGACCATGAAGCGTGGATTATTGGATGGAGAGGAAAGCTTAAAGAAGGTTGATAGTTTCTCTAGGTGGATTACTAAAGAATTTGCTGGTGTGGATGATCTGCATACGCAGTCCTCCCCTGGTATTTCATGGAACACAGATGATTGTGGGGATGTGATAGATGATACATCATTAAACCTGTCCCTTTCTCAAGACCAGCTGTTTAGCATAAATGATTTTTCACCTAAATGGGCTTATGCTGAATCAGAAATTGAGGTGTTGATTGTTGGAACATTTTTGAAGAGTCAACCTATGGTGACAGCATGTAACTGGTCCTGTATGTTTGGGGAAGTGGAGGTTCCTGCTGAGGTTTTAGCAAATGGAATTTTATGCTGTCAAGCTCCACCTCATAAGATTGGACGGGTTCCCTTCTATGTAACGTGTTCCAATAGGTTTGCCTGTAGTGAAGTTCGGGAATTCGAGTACAGAGAAGGTTTCGACAGAAATATAGATTTTACAGAATTTTTTACCAGTTCAACTGAAATGGTCCTTCATTTGCGACTGGTGGGTTTACTTTCTTTAAGTTCAGTGCACACTTCAAATCAAGTGCTTGAGGATGATATGGAGAAAAGAAACTTAATTTTCAAGCTTATTTCACTGAAAGAGGAAGAAGAATATTCAAGTAGAGAAGAGACAACTGTGGAGATGGATGCAACAAAACACAAGTTGAAGGAGCATATGTTTCACAAGCAGGTTAAAGAGATGTTGTACTCTTGGCTTCTTCACAAAGTAACTGAAACTGGTAAAGGGCCTCTTGTATTAAGTGAGGAAGGGCAGGGCGTGTTACATTTAGTTGCTGCTCTCGGTTACGATTGGGCCATAAAACCAATCATAACTGCTGGAGTAAATATCAACTTCCGTGATGTGAGTGGATGGACAGCTCTACATTGGGCTGCATACTGTGGCCGGGAGCGAACAGTTGCGGTCCTTGTGTCCATGGGTGCAGCCACTGCAGCAGTGACAGATCCATGTCCAGAATTTCCTGAAGGTAGAACAGCTTCAGATCTTGCTTCTAGCAATGGCCACAAAGGAATTTCTGGTTTTCTTGCAGAGTCATTATTAACTAGCCATCTTGAATTACTCACAATGGAGGAAAGTAAAGATGGTAGGAAAGAAATTTCAGGAATGAAAGCAGTGCAAACAGTTTCAGAACGAACTGCGACACCTGTGCTTTATGGGGATATACCAGATGTTATCTGCCTTAAGGATTCTCTCAATGCTGTCCGGAATGCTACACAAGCTGCTGATCGAATACATCAAGTATACAGAATGCAGTCATTTCAGAGGAAACAGTTAGCTAAGCATGATCATGATGATGAATTTGGATTGTCGGATCAACAAGCTCTTTCCCTTTTAGCTTCTAGGATGAGCAAATCTGGACAAGGAGAGGGTTTAGCCAGTGCTGCTGCAATACAAATACAGAAAAAGTTTCGGGGTTGGAAGAAGAGAAAAGAATTCTTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTCAGAAAGCAGTATAGAACAATCATATGGTCCGTGGGTATCCTGGAAAAGGTCATATTACGCTGGAGGCGCAAGGGCAGTGGTTTACGTGGATTTCGATCAGATACTGTGAACAAGGTCATCCCTGAGCAACCAATAGAATCTCCGAAAGAGGATGATTATGATTTTCTCAAGGAAGGAAGGAAACAAAGTGAAGCAAGGTTCCAAAAGGCCCTTTCACGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTAGTTGAGGACTTCCGTCAAACCAAGGGAGATAATTTAAATTCGATGAATTCTGAAGAGGCAGTTGATGGTGTGGAGGATTTGATTGATATTGACATGCTTTTAGATGATGAAAATTTCTTGCCTATAGCTTTCGATTGA 3234 0.4187 MAERGSYGLGPRLDLQQLQLEAQNRWLRPAEICEILCNYRMFHITSEPPNRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENFQRRSYWMLEQDMMHIVFVHYLDVKVNKTNVGGKTYSGEATSDSQKGSSLSSGFPRNYGSVPSGSTDSMSPTSTLTSLCEDADSEDIHQASSGSQSYHEAKCLGNDCPIDKIDARSNSSYLMHPSSGDHGQFPVPGSEYIPLIQGHRAHDIASWDNAMEQSSGKDTAPSLVSSTSIPPSTSGNILEENNAVPGNLLGRKNVLIEEERVSQALHSNWQIPFGDDTGELPKWSLTQSLGLEFGSDYGTSLLGDVTDNAGSEILAEMFTFNGELKEKSVHQNISKQYTNTPSQPATKSNSDYEVAGEASINYTLTMKRGLLDGEESLKKVDSFSRWITKEFAGVDDLHTQSSPGISWNTDDCGDVIDDTSLNLSLSQDQLFSINDFSPKWAYAESEIEVLIVGTFLKSQPMVTACNWSCMFGEVEVPAEVLANGILCCQAPPHKIGRVPFYVTCSNRFACSEVREFEYREGFDRNIDFTEFFTSSTEMVLHLRLVGLLSLSSVHTSNQVLEDDMEKRNLIFKLISLKEEEEYSSREETTVEMDATKHKLKEHMFHKQVKEMLYSWLLHKVTETGKGPLVLSEEGQGVLHLVAALGYDWAIKPIITAGVNINFRDVSGWTALHWAAYCGRERTVAVLVSMGAATAAVTDPCPEFPEGRTASDLASSNGHKGISGFLAESLLTSHLELLTMEESKDGRKEISGMKAVQTVSERTATPVLYGDIPDVICLKDSLNAVRNATQAADRIHQVYRMQSFQRKQLAKHDHDDEFGLSDQQALSLLASRMSKSGQGEGLASAAAIQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYRTIIWSVGILEKVILRWRRKGSGLRGFRSDTVNKVIPEQPIESPKEDDYDFLKEGRKQSEARFQKALSRVKSMVQYPEARAQYRRVLNVVEDFRQTKGDNLNSMNSEEAVDGVEDLIDIDMLLDDENFLPIAFD* 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0406 1077 MobiDBLite consensus disorder prediction 270 299 - -
Vra9g0406 1077 Pfam CG-1 domain 21 134 IPR005559 GO:0003677
Vra9g0406 1077 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 901 950 IPR027417 -
Vra9g0406 1077 SUPERFAMILY Ankyrin repeat 675 784 IPR036770 -
Vra9g0406 1077 Pfam IQ calmodulin-binding motif 925 944 IPR000048 GO:0005515
Vra9g0406 1077 Pfam IQ calmodulin-binding motif 902 920 IPR000048 GO:0005515
Vra9g0406 1077 Gene3D Immunoglobulins 484 579 IPR013783 -
Vra9g0406 1077 SMART iq_5 922 944 IPR000048 GO:0005515
Vra9g0406 1077 SMART iq_5 899 921 IPR000048 GO:0005515
Vra9g0406 1077 SMART CG_1_2 18 136 IPR005559 GO:0003677
Vra9g0406 1077 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 1077 - -
Vra9g0406 1077 ProSiteProfiles Ankyrin repeat profile. 724 756 IPR002110 GO:0005515
Vra9g0406 1077 Pfam IPT/TIG domain 491 576 IPR002909 -
Vra9g0406 1077 ProSiteProfiles CG-1 DNA-binding domain profile. 15 141 IPR005559 GO:0003677
Vra9g0406 1077 SMART ANK_2a 724 753 IPR002110 GO:0005515
Vra9g0406 1077 SMART ANK_2a 691 720 IPR002110 GO:0005515
Vra9g0406 1077 Gene3D - 900 947 - -
Vra9g0406 1077 Gene3D - 635 786 IPR036770 -
Vra9g0406 1077 ProSiteProfiles IQ motif profile. 923 947 IPR000048 GO:0005515
Vra9g0406 1077 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 1077 - -
Vra9g0406 1077 SUPERFAMILY E set domains 491 577 IPR014756 -
Vra9g0406 1077 MobiDBLite consensus disorder prediction 146 187 - -
Vra9g0406 1077 ProSiteProfiles Ankyrin repeat region circular profile. 724 749 - -
Vra9g0406 1077 ProSiteProfiles IQ motif profile. 900 929 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0406 Vra-Chr9 3652971 3669356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0406 1 1058 CAMTA Transcription Factor Family AT5G64220 53.652 0.0 1086
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vra9g0406 CG-1 4.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0406 K21596 - gmx:100795682 1805.03