Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0397 ATGGACAGTCTTTGTTGCTTCAGCTCTGTCAGCCAGGTGGTTGGAGGACGATCTTCATCTAACTCTGGCAAGGGCAAGAGCAGTCAGTCCTCAGTCAAATATGGCTATAGCCTAGTCAAAGGGAAAGCAAACCATCCCATGGAGGACTACCATGTAGCAAAATTTGTCCAGTTCAATGGGCGAGAGCTTGGCCTTTTTGCTATATATGATGGGCATCTGGGAGACAGTGTACCGGCCTATTTACAAAAGCACCTGTTTCCTAATATCTTGAAGGAAGAGGACTTCTGGAATGATCCGTTCATGTCCATTTCTAATGCCTATGTAACAACAGATCAGGAAATTCTTTCTCATAGTCCTGATCTGGGACGAGGAGGATCAACTGCAGTGACTGCAATCCTCATAAATAATCAGAAATTATGGGTAGCCAATGTAGGAGATTCTCGAGCTGTTGTGTCAAGGGGAGGGGAGGCTGCACAGATGACAACTGATCATGAGCCCAATACTGAGAGGGGCAGCATTGAGACAAGAGGTGGCTTTGTCTCAAACATGCCAGGTGATGTTGCAAGAGTGAATGGGCAGCTAGCAGTTTCTCGAGCCTTTGGAGACAAAAACCTCAAAACACACTTGCGATCTGATCCTGACATTCAGTACGCTGATATCACCCCAGATGTTGAACTTTTGATACTTGCTAGTGATGGTCTATGGAAGGTAATGGGAAATCAAGAAGCTGTTGATATTGCAAGAAGAATAAAGGATCCACAAAAAGCAGCCAAACAACTAGCCACTGAGGCATTGAACAGAGAGAGTAAGGATGATATTTCCTGCATTGTAGTTCGTTTCAAGGGTTGA 849 0.4488 MDSLCCFSSVSQVVGGRSSSNSGKGKSSQSSVKYGYSLVKGKANHPMEDYHVAKFVQFNGRELGLFAIYDGHLGDSVPAYLQKHLFPNILKEEDFWNDPFMSISNAYVTTDQEILSHSPDLGRGGSTAVTAILINNQKLWVANVGDSRAVVSRGGEAAQMTTDHEPNTERGSIETRGGFVSNMPGDVARVNGQLAVSRAFGDKNLKTHLRSDPDIQYADITPDVELLILASDGLWKVMGNQEAVDIARRIKDPQKAAKQLATEALNRESKDDISCIVVRFKG* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0397 282 PANTHER PROTEIN PHOSPHATASE 2C 1 281 IPR015655 GO:0004722|GO:0006470
Vra9g0397 282 SMART PP2C_SIG_2 44 280 IPR001932 -
Vra9g0397 282 MobiDBLite consensus disorder prediction 153 176 - -
Vra9g0397 282 Gene3D - 16 282 IPR036457 -
Vra9g0397 282 ProSiteProfiles PPM-type phosphatase domain profile. 33 280 IPR001932 -
Vra9g0397 282 PANTHER PROTEIN PHOSPHATASE 2C-LIKE PROTEIN 1 281 - -
Vra9g0397 282 CDD PP2Cc 32 280 IPR001932 -
Vra9g0397 282 Pfam Protein phosphatase 2C 42 273 IPR001932 -
Vra9g0397 282 SMART PP2C_4 19 278 IPR001932 -
Vra9g0397 282 SUPERFAMILY PP2C-like 29 281 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0397 Vra-Chr9 3535878 3544543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0397 1 281 PP2C-type Phosphatase Gene Family AT1G22280 71.080 1.13e-146 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0397 K17506 - gmx:100776795 502.286