Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0390 ATGAATGTTCTTCTTACTAACTATGGATCACCGAATAGTAGTCCTGCTCCTTTGATTATGCAGTCGAAGCAGGAGTTCGTTGCCACTGTTGAGGAAGAAAGAAAGGAAGAGGGAATGTACCTGACATGGGAGGATTTGCAGGTGACAGTTCCAAATGGAAGGAAAGGTAGGAAACCAATTCTTAAGGCTCTAACTGGTTATGCACAACCAGGGAAGCTTTTGGCTATAATGGGTCCTTCTGGTTGTGGCAAATCGACACTTCTTGATGCTTTAGCAGGAAGATTGGGATCGAACATAAAGCAAACGGGGAAGATTCTAATCAATGGCCTGAAGCAAGAACTGGCCTACGGAACATCAGGGTACGTGACACAAGACGATGCGATGCTGTCATGTTTAACAGCTGGAGAAACGTTGTACTACTCAGCTGAACTCCAATTTCCAAACAGCATGTCTATAACTGAGAAGAAGGAACGAGCAGATGCTACGCTGAGAGAAATGGGTCTGCAAGATGCGATCAACACAAGGGTTGGAGGGTGGAGTTGTAAAGGTCTGAGTGGGGGACAGAAACGGAGACTCAGCATATGCATTGAGATTCTAACACATCCCAGACTCCTCTTCCTTGATGAACCAACCAGTGGCCTTGATAGTGCAGCTTCCTTTTATGTTATGACTGGAATTGCAAGTCTCATTCTAAAGGATGGCATTCAAAGGACTATTGTGGCTTCCATCCACCAGCCTAGCAGTCAGGTTTTCCAACTTTTTCATCATCTTTGTCTTCTCTCTTCAGGAGAGACTGTGTATTTTGGACCAGCCTCTCATGCAAATCAGTTTTTCTCTTCCAATGGTTTTCCCTGCCCATCTCTCTACAATCCTTCAGATCATTACCTAAGGATCATAAACAAAGATTTCAATCAGGATGCCGACGAAGGAATTACCACTGAAGAAGCAACTAATATCCTTGTCAGTTCTTATAAATCGTCTGAATATAGTAATGACGTTCAGAATGAAATAGCAAAAATAAGTGTAAACGATTCCGGTGCAGTTGGAAGAAAGATTCACTCTGCATTCCTTACTCAGTGTCTGGTTCTTCTGAAAAGATCTTCGAAGCAAATCTATCGTGATATAAGCAATTACTGGTTACGTCTAACTGTCTTTATAGCAGTATCTGTAAGCTTGGGCTCTATTTTCTATCAAGTTGGTGCAAGTATGACATCAATTCAGGAAAGAGGATCGCTGTTTTGTTTTTTCGTTTCGGTTCTGTGTTTCATGACACTTGTCAGTGGATTCTCGCCGTTAATCGAGCAAATGAAGGTAAGTAATTGATCCATAACTTTGAAATTTGGCTGCATTTTACTCCTAAACTTGACTTTGATAAAACAATTTTTTGATAGCACAGATTGTTACCTTTTACCTTGTCAGGTGTTGAAGAGAGAGAGATTGAATGGACATTATGGTGTAACAGCTTTTCTGGTAGGGAGCACATTTTCCGCTGTTCCTTACACACTATTGGTATCTTTCATTCCGGGAGCTATTGTTAATTATCTTTCTGGACTGCACAAAGGATTAGAGAACTTTGTATACTTTTCTTCTGTCCTATTTGCTATTATGATGTGGGTTGAGAGCCTTATGATGGTTGTTGGGAGCATTTTTCCAAATTTTGTTATGGGTGTGATCACTGCTGGTGGGGTTGAAGGAGTGATGATTTTGACAAGTGGATTCTACAGGCTGCCTAATGATCTTCCGAAACCNTTATGGAAATACCCTTTCTACCATGTTTCCTTCCTCAACTATGCTTTCCAAGGATTGTTAAAGAATGAATTTGAGGGATTAATGTTTGGTTCAGATGGCATAAGTCTTAGTGGTAGATATATTCTTTCAGAGACATGGCATGTGCAAATGGGTCATTCAAAGTGGTTTGATCTTTCTATCATGTTTGGTATGATTCTTCTCTACAGAGTTCTATTCTTGGTCATAACTAAATGTAAGGAGAAATTGAAACATGTTCATCCGAAGCAGGAGTTCGTTGTCACTGTTGAGGAAGAAAGAAAGGAAGAGGGAATGTACCTGACATGGGAGGATTTGAAGGTGACAGTTCCAAATGGAAGGAAAGGTAGGAAACCAATTCTTAAGGCTCTAACTGGTTATGCCAAGCCAGGGCAACTCTTGGCAGTAATGGGTCCTTCTGGCTGTGGCAAATCAACACTTCTTGATGCCTTAGCAGGAAGACTGGCTTCAAGCTCAAAACAAACAGGGAAAATTCTAATTAATGGCCATAAACATGAACTGGCTTATGGAACATCTGCATATGTGACACATGATGATGCTGTGTTATCAACATTAACAGTAGGAGAAGCAGTGTCCTATTCAGCTCATCTCCAATTTCCAGAGTCAATGTCCAACAGAGAGAAGAAAGAGAGAGTAGATTTTACAATCAGACAAATGGGTCTACAAGAGGCCACTAACACAAGGATTAAAGGGAAGGCTTCTAAAGGCCTTAGTGAGGGGCAAAAGAGGAGACTTGCCATTTGTATTCAGATTCTTACAAGTCCCAAACTTCTCCTTCTTGATGAACCAACCAGTGGCCTTGACAGTGCAGCTTCCTACTATGTCATGAGCAGAATTGCAAGCCTGAAGATAAGAGATGGCATCAGAAGAACAATTGTTGCATCCATCCATCAACCCAGCAGTGAAGTTTTTGAGCTATTTGATCATCTTTGTCTTCTGTCTTCGGGTGAAACAGTATATTTTGGCACCACTTCTGCTGCAACCGAGTTTTTTGCTTCTAATGGCTTTCCTTGTCCACCTCTCCACAACCCTTCTGATCATTTCTTGAGAATCATAAACAAGGATTTCAGACAGGATGATAAAGAAGGTTTCCACATAGTAATACCCGAAGAAGAAGCAGTGGATACCATTGTGAAGGTTTTTAAATCTTCTGAAATTAGTAACCAAGTTCGGAAAGAAGTAGCAGCAATAGGTGAAAGAGAATATGGTTTCACGAGGAGCAGCAGAACACAAACAGCATTTCTAACTCAGTGTAATGTTCTTCTAAGAAGATCTTCAGTGCACTTGTTTCGTGATGTAACCAATTATTGGTTGCGTCTAGCTATGTTTATTGTAGCAGCTATTAGTCTGGGAACTATATTCTTTGACGTTGGTTCAAGTAGTTCATCCATTCAGGTAAAAGGGGCACTGGTCTCTTTTGTTGCTTCAGTCCTAACTTTCATAACCCTTCTTGGTGGATTTCCTCCATTTTTGGAACAAATTAAGGTATTTGAACGTGAGAGATTGAATGGACACTATGGTGTTGGTGCTTTTGTTATTAGCCACACATTATCACCTATTCCATACATGACACTGTTGTCAGTGATTCCTGGTGTGATCATTTATTACCTTTCTGGACTTCACACAGGACTTGAACGTTGCATATACTTTTCTAGTGTACTACTTGCATGCATTTTATGGGTTGAGAGTCTCATGATGGTTGTTTCAAGTATCTTCCCAAATCCCAACACTAACATCACAGTCTCTGGGGGAATTGTGGGCGTGATGATTTTAACTGGTGGATTTTTTCGTCTGCCACATGATCTCCCTAAACCATTTTGGAAATACCCTATGTATTATGTTTCCTTCCACAAATATGCCTTTCAAGGATTGTTCAAGAATGAGTTCATAGGTCTGAAGTTGAGAAGTGATCAAGATGGAAGAACCTACATAAGTGACAAGGAAATACTCACCAAGATATGGCAAGTGGAAATGGGTCATTCCAAATGGGTTGATCTTGCTGTCTTAATCGGAATAATTGTTTTATATAGACTTATGTTCTTTATAATCACGAAGACTAAGGAGAAGATGAAGAGCTAA 3864 0.4045 MNVLLTNYGSPNSSPAPLIMQSKQEFVATVEEERKEEGMYLTWEDLQVTVPNGRKGRKPILKALTGYAQPGKLLAIMGPSGCGKSTLLDALAGRLGSNIKQTGKILINGLKQELAYGTSGYVTQDDAMLSCLTAGETLYYSAELQFPNSMSITEKKERADATLREMGLQDAINTRVGGWSCKGLSGGQKRRLSICIEILTHPRLLFLDEPTSGLDSAASFYVMTGIASLILKDGIQRTIVASIHQPSSQVFQLFHHLCLLSSGETVYFGPASHANQFFSSNGFPCPSLYNPSDHYLRIINKDFNQDADEGITTEEATNILVSSYKSSEYSNDVQNEIAKISVNDSGAVGRKIHSAFLTQCLVLLKRSSKQIYRDISNYWLRLTVFIAVSVSLGSIFYQVGASMTSIQERGSLFCFFVSVLCFMTLVSGFSPLIEQMKVSN*SITLKFGCILLLNLTLIKQFFDSTDCYLLPCQVLKRERLNGHYGVTAFLVGSTFSAVPYTLLVSFIPGAIVNYLSGLHKGLENFVYFSSVLFAIMMWVESLMMVVGSIFPNFVMGVITAGGVEGVMILTSGFYRLPNDLPKPLWKYPFYHVSFLNYAFQGLLKNEFEGLMFGSDGISLSGRYILSETWHVQMGHSKWFDLSIMFGMILLYRVLFLVITKCKEKLKHVHPKQEFVVTVEEERKEEGMYLTWEDLKVTVPNGRKGRKPILKALTGYAKPGQLLAVMGPSGCGKSTLLDALAGRLASSSKQTGKILINGHKHELAYGTSAYVTHDDAVLSTLTVGEAVSYSAHLQFPESMSNREKKERVDFTIRQMGLQEATNTRIKGKASKGLSEGQKRRLAICIQILTSPKLLLLDEPTSGLDSAASYYVMSRIASLKIRDGIRRTIVASIHQPSSEVFELFDHLCLLSSGETVYFGTTSAATEFFASNGFPCPPLHNPSDHFLRIINKDFRQDDKEGFHIVIPEEEAVDTIVKVFKSSEISNQVRKEVAAIGEREYGFTRSSRTQTAFLTQCNVLLRRSSVHLFRDVTNYWLRLAMFIVAAISLGTIFFDVGSSSSSIQVKGALVSFVASVLTFITLLGGFPPFLEQIKVFERERLNGHYGVGAFVISHTLSPIPYMTLLSVIPGVIIYYLSGLHTGLERCIYFSSVLLACILWVESLMMVVSSIFPNPNTNITVSGGIVGVMILTGGFFRLPHDLPKPFWKYPMYYVSFHKYAFQGLFKNEFIGLKLRSDQDGRTYISDKEILTKIWQVEMGHSKWVDLAVLIGIIVLYRLMFFIITKTKEKMKS* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0390 1286 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 672 1286 - -
Vra9g0390 1286 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 466 667 - -
Vra9g0390 1286 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 24 440 - -
Vra9g0390 1286 CDD ABCG_EPDR 38 269 - -
Vra9g0390 1286 Pfam ABC-2 type transporter 891 953 IPR043926 GO:0140359
Vra9g0390 1286 Pfam ABC-2 type transporter 244 344 IPR043926 GO:0140359
Vra9g0390 1286 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 466 667 - -
Vra9g0390 1286 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 24 440 - -
Vra9g0390 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 688 925 IPR027417 -
Vra9g0390 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 688 934 IPR003439 GO:0005524
Vra9g0390 1286 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 672 1286 - -
Vra9g0390 1286 Gene3D - 27 281 IPR027417 -
Vra9g0390 1286 Gene3D - 675 928 IPR027417 -
Vra9g0390 1286 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 287 IPR003439 GO:0005524
Vra9g0390 1286 Pfam ABC transporter 62 212 IPR003439 GO:0005524
Vra9g0390 1286 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 278 IPR027417 -
Vra9g0390 1286 Pfam ABC-2 type transporter 1010 1223 IPR013525 GO:0016020|GO:0140359
Vra9g0390 1286 Pfam ABC-2 type transporter 473 606 IPR013525 GO:0016020|GO:0140359
Vra9g0390 1286 ProSitePatterns ABC transporters family signature. 184 198 IPR017871 GO:0005524
Vra9g0390 1286 Pfam ABC transporter 709 859 IPR003439 GO:0005524
Vra9g0390 1286 SMART AAA_5 717 911 IPR003593 -
Vra9g0390 1286 SMART AAA_5 70 259 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0390 Vra-Chr9 3427536 3446025 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0390 705 912 Calmodulin-binding Proteins AT2G36910 26.407 1.23e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0390 K05681 - gmx:100794527 1452.19