Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0389 ATGGCTGAGTGGAAGAAGTTGAGTGTTTTGGGAGAAGGTTCATTTGGCAAAGTGTATCTTGTTCTTCTACGTTTTACACAAGAACAAAATTCGAAAGTTTCACTCTTAGCAGCATTGAAGACAAGTTCTTCTGCTTCAATGGTAAGGGAGAAAAAGATTTTTGATTTATTATTGGGTTGCAAAGGGATTGTGCAATGTCACTATTATAATAGCATTGTTGAGGGAGGTAAGTTAACTTATAACCTTTTCATGGAATATGCCATTTATGGTTCTTTGGGCAATTTAATAAAGACAAAGTTATTCTCTGATAAGGAAGTGGTAGTCTACACTCANATGATTCTCAAGGGACTTTATTGTATGCACGAGAAGGGAATTGTTCATGGTGATCTTAAACCAGATAACATTCTCCTTTTTCATTCATCGGATCGTCATATAAAATATCAACTAAAGATTTCTGATTTTGGATTGTCTAAGACTAGCGAAGAGGCAAATACTGATTTAGGAGAGATCAAGTTCAGAGGGACACCCTATTACATGTCACCAGAATCAGTTAGAGGTTTTAAGGAAACACCTTTAGATATATGGTCTTTGGGATGCATTGTTATTGAGATGAGCACTGGACTTCGAGAATGGTGGAACTTTGAATCCACAAACCAATTATTGTGCAAGCTTGCATTTTCTGAAGAAGAACCAAAGATACCAGATAAACTTAGTTACGATTGCAAGGATTTTTTGAGAAAATGTTTGGTGAATGATCCTACGCAAAGATGGACGGCTAAAATGCTTCTTAATCATCCTTTTATTCAAAAGAAATAG 816 0.3566 MAEWKKLSVLGEGSFGKVYLVLLRFTQEQNSKVSLLAALKTSSSASMVREKKIFDLLLGCKGIVQCHYYNSIVEGGKLTYNLFMEYAIYGSLGNLIKTKLFSDKEVVVYTXMILKGLYCMHEKGIVHGDLKPDNILLFHSSDRHIKYQLKISDFGLSKTSEEANTDLGEIKFRGTPYYMSPESVRGFKETPLDIWSLGCIVIEMSTGLREWWNFESTNQLLCKLAFSEEEPKIPDKLSYDCKDFLRKCLVNDPTQRWTAKMLLNHPFIQKK* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0389 271 ProSiteProfiles Protein kinase domain profile. 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0389 271 Gene3D Transferase(Phosphotransferase) domain 1 1 271 - -
Vra9g0389 271 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 270 - -
Vra9g0389 271 ProSitePatterns Protein kinases ATP-binding region signature. 10 40 IPR017441 GO:0005524
Vra9g0389 271 Pfam Protein kinase domain 5 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0389 271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vra9g0389 271 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 270 - -
Vra9g0389 271 SMART serkin_6 4 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0389 271 SUPERFAMILY Protein kinase-like (PK-like) 3 269 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0389 Vra-Chr9 3396055 3396870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0389 3 268 MAP Kinase Kinase Kinase AT4G36950 40.860 3.58e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra9g0389 Pkinase 8.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0389 - - gmx:102660670 318.931