Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0388 ATGGCTGGGTGGAAGAAGTTGAGAGTTTTGGGAGAAGGTTCATATGGCACGGTGTATCTTGTTCTTTTACGTTCTACACAAGAACAAAATTCAAAACTCTCACTTTTAGCATTGAAGACAAGCAATTTAATAAAGACAGAGGTATTATCTCAGAAGGAAGTGATAGTCTACACTCACATGCTTCTCAAGGGACTTTCTTACATGCACGAAAAGGGGATTACTAGCGAAGAGGCAAATACTGATTTAGGAGGGATCAAGTTTAGAGGGACACCCTATTACATGTCACCGGAATCAGTTAGAGGTTTTAAGGAAACACCTTTAGATATATGGTCTCTGGGATGCATTGTTATTGAGATGAGCACTGGACTTCGAGAATGGTGGAACATTGAATCCACAAACCAATTATTGTGCAAGCTTGCATTTTCTGAAGAAGTACCAAAGATACCAGATAAACTTAGTTACGATTGCAAGGATTTTTTGAGAAAATGTTTGATGAATGATCCTCAACAAAGATGGACAGCTAAAATGCTTCTGAATCATCCTTTTATTCAAAAGAAATACTCAACATCATAA 573 0.3752 MAGWKKLRVLGEGSYGTVYLVLLRSTQEQNSKLSLLALKTSNLIKTEVLSQKEVIVYTHMLLKGLSYMHEKGITSEEANTDLGGIKFRGTPYYMSPESVRGFKETPLDIWSLGCIVIEMSTGLREWWNIESTNQLLCKLAFSEEVPKIPDKLSYDCKDFLRKCLMNDPQQRWTAKMLLNHPFIQKKYSTS* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0388 190 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 77 186 - -
Vra9g0388 190 Pfam Protein kinase domain 86 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0388 190 SMART serkin_6 4 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0388 190 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 77 186 - -
Vra9g0388 190 SUPERFAMILY Protein kinase-like (PK-like) 3 185 IPR011009 -
Vra9g0388 190 ProSiteProfiles Protein kinase domain profile. 1 183 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0388 190 ProSitePatterns Protein kinases ATP-binding region signature. 10 39 IPR017441 GO:0005524
Vra9g0388 190 Gene3D Transferase(Phosphotransferase) domain 1 74 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0388 Vra-Chr9 3390452 3391266 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0388 57 190 MAP Kinase Kinase Kinase AT5G55090 40.127 5.50e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra9g0388 Pkinase 2.6e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0388 - K20716 vra:106773110 389.037