Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0386 ATGGAAAATGACGACGCTGAAATGCTCGGTTCAGACAGCAACGAAGCTGGCTTGGAGTTGGATGACATGAAGAAGCGCTTGAAGGAAATGGAAGACGAAGCTTCTGCTTTGCGGGAGATGCAGGCAAAGGTCGAGAAGGAAATGGGATCTGTACAAGCTCCTGCTACTGCTGCTTCGAGTCAGAACAATAAAGAGGAAGTAGATTCTCGATCAGTCTTTGTCGGCAATGTGGACTATTCATGTACTCCAGAAGAAGTGCAGCAGCATTTCCAGTCATGTGGAACCGTAAACCGAGTCACCATCCGAACTGATAAGTTTGGCCAACCAAAGGGCTATGCTTACGTAGAGTTTCTTGAAGTGCAGGCTGTTCAAGAAGCTCTTTCGCTGAATGAATCTGAACTACACGGGCGTCAATTGAAGGTTACTGCTAAGAGGACCAATATACCAGGGATGAAGCAATATCGTCCTCGCCGGCCTAATCCTTACCAGGGGTTTCGAGGCAGAGCCCCGTATGCACCTCCTTTTGCTTATGCTCCTTTTGGATATGGAAAAGTTCCAAGGTTTAGAATGGGAATGCGCTATAGTCCCTACTATTAA 597 0.4707 MENDDAEMLGSDSNEAGLELDDMKKRLKEMEDEASALREMQAKVEKEMGSVQAPATAASSQNNKEEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVQAVQEALSLNESELHGRQLKVTAKRTNIPGMKQYRPRRPNPYQGFRGRAPYAPPFAYAPFGYGKVPRFRMGMRYSPYY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0386 198 CDD RRM_II_PABPs 71 142 - -
Vra9g0386 198 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 8 195 - -
Vra9g0386 198 Coils Coil 13 47 - -
Vra9g0386 198 MobiDBLite consensus disorder prediction 1 69 - -
Vra9g0386 198 Gene3D - 12 143 IPR012677 -
Vra9g0386 198 MobiDBLite consensus disorder prediction 53 69 - -
Vra9g0386 198 SMART rrm1_1 71 142 IPR000504 GO:0003723
Vra9g0386 198 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 8 195 - -
Vra9g0386 198 SUPERFAMILY RNA-binding domain, RBD 59 168 IPR035979 GO:0003676
Vra9g0386 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 72 140 IPR000504 GO:0003723
Vra9g0386 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 70 146 IPR000504 GO:0003723
Vra9g0386 198 MobiDBLite consensus disorder prediction 17 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0386 Vra-Chr9 3370407 3375574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0386 71 197 Eukaryotic Initiation Factors Gene Family AT2G36660 25.581 9.56e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0386 K14396 - mnt:21400190 330.102