Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0385 ATGGCTTCTTTTGTTCCATATCATTCACCTGCTCCTGGTGATTATGAAACTAAACCTAACTCATCAAGAGTTGAAGCCACTGCACTGGAAATAGAAGAAGAATGGAGTGTTCCTAAAGCAAAAGGAGAAAGTTCAGGTTGGAGAGAAGAGGAAGGAAGATTAGGTTCCGACACAAGGCAAACTGGGGAGATTCTTATCAATGGGAAGAAACAAGCCCTGGCATATGGAACATCAGCATATGTGACACAAGATGATACCTTGATGACAACCTTAACGGTTGGAGAAGCTGTGCACTATTCAGCTCAACTTCAGTTACCTGACAGCATGTCGAATCAAGAGAAGAAAGAGAGAGCAGATTTTACAATCAGAGAAATGGGTCTTCAAGATGCCATTAACACAAGAATTGGAGGATGGGGTGTTAAAGGGATTAGTGGTGGTCAGAAAAGGAGAGTTAGCATCTGCATTGAGATTCTTACACGACCAAGGCTACTTTTCCTTGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCCTATTATGTCATGAAAAGAATCGCTACATTTGATAAAAGAGATGACGTTCGCCGAACTATTATTGCCTCAATCCACCAACCTAGTACTGAAGTTTTTCAACTTTTCGACAACCTTTGTCTTCTATCTTCAGGCAGAACTGTCTACTTTGGACCTGCTTCTGCTGCAAGTGCGTTTTTCGCTTCAAATGGTTTTCCTTGTCCTTCTCTCATGAATCCATCAGATCATATGCTGAAAACCATAAACAAGGATTTCGAACAGGACACTGAGTTAGGAGGGAAGGATACAATACACACTGAAGAAGTGATTGAGATCCTTGTAAATTCGTACAAGTCATCTGAAATGAACCGAGAAGTTGAGAAAGAAGTAGCAGAACTAATTGAAAAGGACACCAGTTCAACAAACAAGAAGAGAAAGCATGCTGGCTTTATTAGTCAGTGCTTTTCTCTTACCAAACGATCATCTGTTAACATGTATCGTGATCTCGGCTATTATTGGCTACGCCTTGCCATATATGTTGCATTGGCTATAAGTTTAGCCACTATTTTCTATGATTTAGGTACAAGCCACCGCTCAATTCAGGATAGAGGTTCATTTCTTATGTTTGTATCTTCATTCATCACTTTCATGACCATTGGCGGATTCCCTTCTTTTGTGGAGGATATGAAGGTGTTTGAACGTGAGAGACTAAATGGACATTACAGTGTGACTGCATATGTGATTGGGAACACCTTTTCATCAATCCCATTCTTGTTGTTGGTTTCCCTGATTCCTGGATCTATAGCCTATTACCTTCCTGGTCTTCAAAAAGGCTTTGAACACTTTGTATACTTCATCTGTTGTCTCTTTTCTTGTCTGATGTTGGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTCCCGAACTTTCTAATGGGCATCATAACCGGTGCTGGAATTCAGGGAATGATGATTCTGAGTGGTGGGTTCTTCAGATTGCCAAGTGATCTTCCAAAGCCATTTTGGAAATACCCAATGTTCTATTTTGCCTTCCATAGATATGCGTACCAAGGACTGTTCAAAAACGAGTTTGAAGGACTAAGATTCGCTTCAGATAATGTCGAAGGTGGCTCCTACGTTACTGGTGAAGAAATTCTAACAAACACATGGCAAGTAAACATGAGTTACTCCAAGTGGGTTGATCTTGGAATCTTGCTGGGGATGATTTTTCTGTATCGAGTTCTCTTCTTGGTTAACATCAAAACTACTGAGAAGCTGAAACCGATCATTGTATCATTCTTGTCGTCAAGAACCTCTACCAAGCGAACAACGTCGATCATGCAGAATCCTAATGCCACTCCTCTTCAAGAAGTTCAAGTTACTTAA 1896 0.4061 MASFVPYHSPAPGDYETKPNSSRVEATALEIEEEWSVPKAKGESSGWREEEGRLGSDTRQTGEILINGKKQALAYGTSAYVTQDDTLMTTLTVGEAVHYSAQLQLPDSMSNQEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEILTRPRLLFLDEPTSGLDSAASYYVMKRIATFDKRDDVRRTIIASIHQPSTEVFQLFDNLCLLSSGRTVYFGPASAASAFFASNGFPCPSLMNPSDHMLKTINKDFEQDTELGGKDTIHTEEVIEILVNSYKSSEMNREVEKEVAELIEKDTSSTNKKRKHAGFISQCFSLTKRSSVNMYRDLGYYWLRLAIYVALAISLATIFYDLGTSHRSIQDRGSFLMFVSSFITFMTIGGFPSFVEDMKVFERERLNGHYSVTAYVIGNTFSSIPFLLLVSLIPGSIAYYLPGLQKGFEHFVYFICCLFSCLMLVESLMMIVASIVPNFLMGIITGAGIQGMMILSGGFFRLPSDLPKPFWKYPMFYFAFHRYAYQGLFKNEFEGLRFASDNVEGGSYVTGEEILTNTWQVNMSYSKWVDLGILLGMIFLYRVLFLVNIKTTEKLKPIIVSFLSSRTSTKRTTSIMQNPNATPLQEVQVT* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0385 631 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 43 625 - -
Vra9g0385 631 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 43 625 - -
Vra9g0385 631 Pfam ABC transporter 58 171 IPR003439 GO:0005524
Vra9g0385 631 MobiDBLite consensus disorder prediction 27 57 - -
Vra9g0385 631 Pfam ABC-2 type transporter 323 534 IPR013525 GO:0016020|GO:0140359
Vra9g0385 631 Gene3D - 52 237 IPR027417 -
Vra9g0385 631 MobiDBLite consensus disorder prediction 1 58 - -
Vra9g0385 631 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 5 246 IPR003439 GO:0005524
Vra9g0385 631 Pfam ABC-2 type transporter 203 317 IPR043926 GO:0140359
Vra9g0385 631 ProSitePatterns ABC transporters family signature. 143 157 IPR017871 GO:0005524
Vra9g0385 631 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0385 Vra-Chr9 3336103 3342441 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0385 127 207 Calmodulin-binding Proteins AT2G36910 37.037 8.19e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0385 K05681 - gmx:100813462 1005.74