Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0384 ATGGCTGAGTGGATGAAGTTGAGAGTTTTGGGGGAAGGTTCATTTGGCAAAGTGTATCTTGTTCTTCTACGTTTTACACAAGAACAAAATTCGAAAGTTTCACTCTTAGCAATGAAGACAAGTTCTTCTGCATCAATGGTAAGGGAGAAAAAGATTTTTGATTTATTATTGGGTTGTAAAGGGATTGTGCAATGTCACTATTATAAAATCATTGTTGAAGGAGATAAGTTAACTTATAACCTTTTCATGGAATATGCCCTTTATGGTTCTTTGGGCAATTTAATAAAGATAGAGTTATTCTCTGACAAGGAAGTGGTAGTCTACACTCACATGATTCTCAAGGGACTTTATTGTATGCACGAGAAGGGAATTGTTCATGGTGATCTTAAACCAGATAACATTCTCCTTTTTCATTCATCGGATCGTCATATAAAATATCAACTAAAGATTTCTGATTTTGGATTGTCTAAGACTAGCGAAGAGGCAAATACTGATTTAGGAGAGATCAAGTTCAGAGGGACACCCTATTACATGTCACCNGAATCAGTTAGAGGTTTTAAGGAAACACCTTTAGATATATGGTCTCTGGGATGCATTGTTATTGAGATGAGCACTGGACTTCGAGAATGGTGGAACTTTGAATCCACAAACCAATTATTGTGCAAGCTTGCATTTTCTGAAGAAGTACCAAAGATACCAGATAAACTTAGTTATGATTGCAAGGATTTTTTGAGAAAATGTTTAATGAATGATCCTCAACAAAGATGGACGGCTAAAATGCTTCTGAATCATCCTTTTATTCAAAAGAAATAA 813 0.3518 MAEWMKLRVLGEGSFGKVYLVLLRFTQEQNSKVSLLAMKTSSSASMVREKKIFDLLLGCKGIVQCHYYKIIVEGDKLTYNLFMEYALYGSLGNLIKIELFSDKEVVVYTHMILKGLYCMHEKGIVHGDLKPDNILLFHSSDRHIKYQLKISDFGLSKTSEEANTDLGEIKFRGTPYYMSPESVRGFKETPLDIWSLGCIVIEMSTGLREWWNFESTNQLLCKLAFSEEVPKIPDKLSYDCKDFLRKCLMNDPQQRWTAKMLLNHPFIQKK* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0384 270 SMART serkin_6 4 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0384 270 ProSiteProfiles Protein kinase domain profile. 4 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0384 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vra9g0384 270 ProSitePatterns Protein kinases ATP-binding region signature. 10 39 IPR017441 GO:0005524
Vra9g0384 270 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 269 - -
Vra9g0384 270 Pfam Protein kinase domain 6 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0384 270 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 269 - -
Vra9g0384 270 Gene3D Transferase(Phosphotransferase) domain 1 1 270 - -
Vra9g0384 270 SUPERFAMILY Protein kinase-like (PK-like) 3 268 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0384 Vra-Chr9 3310842 3311654 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0384 3 267 MAP Kinase Kinase Kinase AT4G36950 41.219 1.25e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vra9g0384 Pkinase 1.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0384 - - gmx:102660670 317.005