Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0368 ATGGCCGCCACAACCAACGCCGCTGCCCCGCCGCGCCAGCTCTCTCCAAAGGAAACCGACATCCAGATGATGTTGGCAGCCGACGTTCACCTGGGCACCAAAAACTGTGATTTCCAAATGGAGCGCTACATTTTCAAGCGCCGCAACGATGGTATTTACATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGGCCTTATGGTCAGAGAGCGGTTCTCAAATTTGCCCAGTATACCGGTGCTCATGCCATTGCTGGAAGGCACACTCCTGGTACCTTTACCAATCAGCTCCAAACCTCTTTTAGCGAGCCTCGCCTCCTTATCCTCACGGATCCAAGAACAGATCATCAGCCCATTAAGGAAGCTGCTCTTGGAAACATTCCAACCATTGCTTTCTGTGACACTGACTCGCCCATGAGGTATGTGGACATTGGGATTCCTGCCAACAACAAGGGAAAACACAGCATTGGGTGTCTCTTTTGGCTTCTTGCCAGGATGGTGTTGCAAATGAGGGGTACCATTCGTCCTGGCCTCAAATGGGATGTTATGGTGGACTTGTTCTTCTATAGAGAACCAGAGGAGGCTAAGCAACAAGAGGAGGAGGAAGCTCCTGCTGGTGATTATGCCATCACTGACTATAATCCCGGTGCTATTGCTGCTGATGGCCAGTGGCCCGGTACAATTGATCAATCGTGGACAGATGCAGTTCCCCAACCTATTCCAGCTGTACCTGGTGTNAACTGGGGAGCGCCAGCCTCTACGGATGCTCCTGCTGCAGGAGATTGGGGCGAGGCTGTTCCACCGCCACAACAAATCCCTCTTCCTTCTTCCGGAGTTGAATCTGTCCAAGCAAGTGGCTGGGATTAA 930 0.5108 MAATTNAAAPPRQLSPKETDIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYREPEEAKQQEEEEAPAGDYAITDYNPGAIAADGQWPGTIDQSWTDAVPQPIPAVPGVNWGAPASTDAPAAGDWGEAVPPPQQIPLPSSGVESVQASGWD* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0368 309 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 Pfam Ribosomal protein S2 123 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PANTHER 40S RIBOSOMAL PROTEIN SA 6 294 - -
Vra9g0368 309 Gene3D - 20 226 - -
Vra9g0368 309 Hamap 40S ribosomal protein SA [rps-0]. 8 286 IPR027498 GO:0003735|GO:0006412|GO:0015935
Vra9g0368 309 TIGRFAM uS2_euk_arch: ribosomal protein uS2 17 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vra9g0368 309 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Vra9g0368 309 MobiDBLite consensus disorder prediction 240 309 - -
Vra9g0368 309 PANTHER 40S RIBOSOMAL PROTEIN SA 6 294 IPR005707 GO:0003735|GO:0006412|GO:0015935
Vra9g0368 309 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vra9g0368 309 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0368 Vra-Chr9 3083846 3085831 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0368 3 281 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.386 1.76e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0368 K02998 - gmx:548014 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0368 9 3083846 3085831 Vra9g0368 9 3083846 3085831 ECH