Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0361 ATGGCTAATGAAGGAAACAAAAGCAATGACTTCTATACGATCTTGGGGTTGAACAAGGAGTGCACTGAATTGGAGCTAAAGAATGCATATAAGAAACTTGCAAAGAAATGGCACCCGGATCGTTGTTCTGCATCTGGGAATTCAGAGTTAGTGGAACAAGCTAAGAAGAAATTCCAGGAAATTGGGGAAGCCTATTCTGTTTTATCTGACGCCAACAAAAGGCTAATGTACGACGTTGGTGTCTACGATAGTGATGACGACGAAAACGGCATGGGGGACTTTTTGGACGAAATGTTAACAATGATGAGTCAGACCAAATCAAATGAAAATGGAGAGGAGAGCTTTGAGGAGTTGCAACAGTTGTTTGAAGACATGTTTCAAGCAGATATCGGATTGGATGGAAGCCCTTCTCTTTCTTCTGCAGATTGCTCTAATTCATCTGCTTACATGACATACAGTGAAAGTTCTAGTTCAAATAAACGCAATTCCACTGAGATGAAATTTGGGAAGGCAGAGGATTCCTCTGTCTTTGATACCAGTTACCAGAATTTCTGTTTTGGGGTGAACCTACTCCAAGATATAGAGGAAGGAAAGGAGAGAATTCCAGAAGGAGGAGGTAGCAAAAGATGTAGAAATGGCAGAAAGCAAAAAATGTCCTATGAACATGATGTTTTAATCTGA 681 0.4053 MANEGNKSNDFYTILGLNKECTELELKNAYKKLAKKWHPDRCSASGNSELVEQAKKKFQEIGEAYSVLSDANKRLMYDVGVYDSDDDENGMGDFLDEMLTMMSQTKSNENGEESFEELQQLFEDMFQADIGLDGSPSLSSADCSNSSAYMTYSESSSSNKRNSTEMKFGKAEDSSVFDTSYQNFCFGVNLLQDIEEGKERIPEGGGSKRCRNGRKQKMSYEHDVLI* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0361 226 ProSiteProfiles dnaJ domain profile. 10 81 IPR001623 -
Vra9g0361 226 Gene3D DnaJ domain 7 134 IPR036869 -
Vra9g0361 226 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 224 - -
Vra9g0361 226 MobiDBLite consensus disorder prediction 199 226 - -
Vra9g0361 226 CDD DnaJ 10 70 IPR001623 -
Vra9g0361 226 SMART dnaj_3 9 73 IPR001623 -
Vra9g0361 226 PRINTS DnaJ domain signature 12 30 IPR001623 -
Vra9g0361 226 PRINTS DnaJ domain signature 30 45 IPR001623 -
Vra9g0361 226 PRINTS DnaJ domain signature 53 73 IPR001623 -
Vra9g0361 226 PRINTS DnaJ domain signature 73 92 IPR001623 -
Vra9g0361 226 SUPERFAMILY Chaperone J-domain 7 93 IPR036869 -
Vra9g0361 226 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Vra9g0361 226 Pfam DnaJ domain 10 78 IPR001623 -
Vra9g0361 226 PANTHER PUTATIVE, EXPRESSED-RELATED 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0361 Vra-Chr9 3034457 3037896 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0361 12 78 C2H2 Transcription Factor Family AT1G74250 42.647 7.65e-10 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0361 9 3034457 3037896 Vra9g0361 9 3034457 3037896 ECH