Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0358 ATGGACGATGAGGAAGAGATCCAGTCGCATCCGTCGCCGGCCAGCGGATCCCCGGTCTCTTCTCCGAGGGCGAACGGACGGATAACGGTCACTGTCGCGGCGCCGGCGCCGTCGAATAGTTTGGCATTAGCGCTTCCGATTCAGCAGCCGTCGAAGGGGAACGGTGGTGGAGGAGGCGGCGGAGGAAGGGAGGATTGCTGGAGCGAAGGCGCGACGGCGGTACTGATCGACGCGTGGGGAGAGAGGTATCTGGAACTGAGCAGAGGAAATCTGAAACAGAAGCACTGGAAGGAGGTGGCGGATATCGTGAGCGGCAGAGAGGATTACACGAAGGCGCCGAAGACAGATATTCAGTGCAAAAACCGGATCGACACCGTAAAGAAGAAGTACAAATCGGAGAAGGCTAAGATCGCCGCCGGCTCCATCAGCAAGTGGCCGTTCTTCGACCGTTTGGACAAATTAATCGGTCCAAGCGCCAAGATCCCCGGCGCCGGAGGCTCCTCCGGTACTGCCGGCACCAGCGCTGCCGGAAACAGTATTTTACAGTCGCACAAAGTGCCGTTAGGGATTCCGGTGGGCGTTCGCGACGGCGTGAATCAGTATCACCGTCCTCAAAGGCCCGCGCAGCAACAACCGCAGCCGGTTCCGTTGAAGAACCAGAAGATTCAGTTCCGGCGCCGCGGTCCGCCGTTGGAATCAGATTCGGACGAGCGTGGGGCGTCATCGCCAGCTTCGAGCGACAGTTTTCCCCCGGAGAGTTTCGAGAGGAAGAGGCCGCGGGTGATGAGTTCGAACGCAGGGAAAGGAAGCGAAGGAAGACGGAGGGCGAAGGGTTGGGGAAGCGCGGTGAGGGAACTGACGCAGGCGATTCTGAAATTTGGCGAGGCGTATGAACACGCGGAGAGCTCGAAGCTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTCGCGAAGGATTTGGAGTTGCAGAGGATGCAGTTTTTCATGAAGACACAACTGGAGATTTCGCAACTGAAGCTTGGAAGAAAAGGTGCTAATCCTGGCAACAATCACCATAGCACCACGAACAATAACAATAACAACAATCATAACAACAATAATAGCGACAGCGAGTGA 1122 0.5686 MDDEEEIQSHPSPASGSPVSSPRANGRITVTVAAPAPSNSLALALPIQQPSKGNGGGGGGGGREDCWSEGATAVLIDAWGERYLELSRGNLKQKHWKEVADIVSGREDYTKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGSISKWPFFDRLDKLIGPSAKIPGAGGSSGTAGTSAAGNSILQSHKVPLGIPVGVRDGVNQYHRPQRPAQQQPQPVPLKNQKIQFRRRGPPLESDSDERGASSPASSDSFPPESFERKRPRVMSSNAGKGSEGRRRAKGWGSAVRELTQAILKFGEAYEHAESSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQLEISQLKLGRKGANPGNNHHSTTNNNNNNNHNNNNSDSE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0358 373 MobiDBLite consensus disorder prediction 156 280 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 203 218 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 167 181 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 341 373 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 45 65 - -
Vra9g0358 373 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 341 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 10 28 - -
Vra9g0358 373 Gene3D - 67 132 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 349 373 - -
Vra9g0358 373 MobiDBLite consensus disorder prediction 1 28 - -
Vra9g0358 373 Pfam Myb/SANT-like DNA-binding domain 64 154 IPR044822 -
Vra9g0358 373 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 341 IPR044823 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0358 Vra-Chr9 3019531 3021524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0358 1 354 Trihelix Transcription Factor Family AT3G14180 47.926 1.01e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vra9g0358 Myb_DNA-bind_4 1.1e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0358 - - gmx:100812599 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0358 9 3019531 3021524 Vra9g0358 9 3019531 3021524 ECH