Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0356 ATGGATGATTCTTTTTCCTTTGATGGTGACTCCTTCTCAAGCCACCAGAGACGCCACTATCCAACACCGGCGAGTTATCACAGTGTGTCTGGCTCTTTCATACCATCCAGCTTTCACAGCGATGCCACTTCCACAACCAGAACAGCTCGCCGCAACCGAGTTCCTACCACACCCTTCGCTTCGGACGATGACCATTCATGGCAAGAAGAGGTTTCATGGAAGTTTGAGGCCACAGGGTGGCACCATTACAGCACAAACTATGGTTCTCTTCTGACTCCATGGGCAACCAGCCCCCCTTCTGATCACAGCCGAGTTTTTCGACGATCAGCCAATGACTTCTACCTTTCAAGAACAAGTGGGTTCAGAGGTATCGCAAGCTCTTCTTCTTATGAACATTCTGGCTATGGTAGAGTTGAACTTAAGAGCTATGTTGCGAGGGACAATGATCAGAGTTACTTTGATAATGGATTATCTACATCGGGGTTCATCCACCAGCAGAGTAGTAGAAAAAGTAAGAGTAGTCCATTGGCTGAAGAAGATGAGCTAAGTATGATAGATTATAGCATAACAGAAGAACGTGTAATTTCACCTAATGTCAATGGTCATGGTCTTGAATCCCCATATCTTAAACATGGTCATGGTGATTATGGTGGGAGTTGCTATGTCGGTCACGGACTACCATCATATGATGGTAGCCATCTAAGTGGAAGTGGTGGGGGCTATACTTATCGCCATCATGACATTGAGAAGCATTCAGGATATGATGAAGAAGGTGAGGAGGACATGGATGAGGAAGATGCAAGTCCTCCAAAGGCTGTTGGATTGTTCAGCTTGTTTAGGTACTCAACAAAGTGGGATTGGATGCTTGTGTTTGTGGGGTGTTTGGGGGCCCTCATAAATGGAGGATCACTTCCTTGGTACTCTTATCTTTTTGGAGACTTGATCAACAAGATTTCAGAAGCAGACAAGGACAAAAAACAGATGATGAAGGATGTAGAAAAGATATGCCTGTTTATGGCGGGGCTAGCTGCTGTTGTGGTAGTTGGAGCATATTTGCAGATCACATGTTGGAGGTTAGTGGGGGAGAGATCTGCACAGAGAATTAGAAGTGAGTATCTAAGAGCAGTTCTTAGACAGGATATTACTTTCTTTGATACAGATATCAACACAGGTGATATTATGCATGGAATTGCAAGTGATGTTGCACAGATTCAAGAAGTTATGGGAGAGAAGATGGCACACTTCATTCATCATATATTTACATTCATATGTGGATACACAGTTGGGTTTAAAAGATCATGGAAAGTCTCTCTTGTGGTATTCTCAGTCACTCCATTGACAATGTTTTGTGGCATGGCTTACAAAGCACTTTATGGAGGCCTAACAGCAAAAGAAGAAGCTTCTTATAGGAAAGCTGGTAGCGTTGCGGAGCAAGCCATAAGCTCAATTAGGACAGTTTTTTCATTTGTTGCAGAAAGCCAATTAGCTGGAAAATATGATGAACTACTGCAGCAATCAGCTCCAATTGGGGCAAAAGTTGGTTTTGCTAAAGGTATAGGCATGGGTGTGATCTACTTGATAACCTATTCAACATGGGCACTGGCATTCTGGTATGGCTCTGTATTAATTGCCAAGAATGAACTTGATGGAGGTTCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGAGGAAGAGGATTGGCACTGGCACTTTCATATTTTGCACAGTTTGCTCAAGGGACTGTTGCAGCAAGCCGTGTATTCTATGTTATAGAGAGAATCCCTGAGATTGATCCCTATAGCCCTGAGGGTAGGAAGCTTTCTGGTGTTCGTGGAAGGGTTGAGTTAAAAAGTGTTAGTTTTGCATATCCATCACGTCCTGATTCTCTGATACTTCATTCCCTTAGTTTGATAATACCATCTTCAAAAACTGTGGCATTAGTTGGTGCCAGTGGTGGGGGAAAGTCCACTATCTTTGCTCTCATAGAGAGGTTTTATGATCCTACTGAAGGGATTATTACCTTGGATGGTCATGATTTGAGGACATTGCAAGTAAAGTGGCTACGTGATCAGATTGGGATGGTTGGTCAGGAGCCAATCCTCTTTGCCACATCTATTCTGGAAAACGTGATGATGGGGAAGGATGATGCCACAAAGGAAGAGGCAATTGCTGCTTGCATTGCTGCTGATGCTCACAGCTTCATCTCTAGCCTACCACTAAGCTATGACACTCAGGTGGGAGATAGGGGAACAAAACTCTCCGGAGGTCAGAAGCAGAGAATTGCATTGGCTCGAGCAATGATGAAAGATCCTAAAATCCTTCTTCTAGATGAACCTACTAGTGCTCTTGATGCTGAGTCAGAGTCTGCGGTCCAACGGGCAATTGACAAGATTTCTGCTGGACGAACAACCATTGTGATTGCTCACAGGATAGCAACAGTGAAGAATGCTCATACCATTGTGGTTCTTGAACATGGTTCTGTCATTGAGATTGGTGACCATCGACAGCTTATGTCAAAACCAGGAGCATACCACAACCTTGTCAAGCTTGCTACCGAAGCCATTTCAAAACCTCTAGCTATAGAGAATGGCATACAAAAAGCCAATGATGTATCCATCTATGATAAATCTGTTGCTGCTTTATCACGATCAAGATACGTGGTTGATATCCCTATGTCTAAAGACTTAATATCTATGCATGGGGTGGAGAAACAGGAAGACATGGAAGATGATGAACAAGACACAAAGGCAAAAAAATACAGCCTTTCTCAAGTATGGAAACTGCAAAAGCCAGAGCTTGTGATGCTATTTTCAGGACTTATTCTGGGAATGTTTGCTGGTGCTATTCTGTCCCTTTTCCCATTGGTTTTAGGCATATCCTTGGAAGTATATTTTGGCCATGACACTCATAAGATGAAAAGAGATGTTGCACACCTTTGTTTAACCCTTGTTGGCCTTGGAATTGGTTGCATACTTTCTATGACAGGACAACAAGGTCTGTGTGGTTGGGCTGGATCAAAGCTGACACAAAGAGTTAGATACATCTTGTTTCAATCCATACTGAAACAAGAACCTGGGTGGTTTGACTTTGAAGAAAACTCTACGGGAGTGTTGGTATCAAGGCTCTCACTCGACTGTGTTAGTTTTCGATCAGTACTCGGTGACAGATTCTCAGTCCTTCTTATGGGGTTGAGTTCAGCTGCTGTTGGCCTTGGTGTGTCCTTTGCCTTCAACTGGAGACTAACGCTTGTGGCAGCTGCTGTAACTCCTTTTGCACTTGGTGCAAGCTACATAAACTTGATCATAAACGTTGGGCCGCGTGTGGACAACGACTCTTATGGCAAAGCCAGTAACCTTGCTTCTGGTGCAGTGTCGAACATAAGGACAGTCACCACATTTTCTGCCCAGGAACAGATAGTTAAGTCCTTTGATAGAGCCCTATCAGAACCTAGAAGAAAATCATTACGAAGATCACAACTTCAAGGTCTTATGTTTGGGTTGTTTCAAGGTTCCATGTATGGAGCATACACCTTAACACTTTGGTTTGGCGCATACCTTGTACAACATGACAAGGCAAAACTTGGAGACGTGTTTAAGATCTTTCTCATTCTTGTTCTGAGCTCATTCTCTGTGGGACAACTAGCTGGCTTGGCACCAGATACTTCTACGGCGGCTACGGCAATTCCTGCAGTTCAAGATATCATAAAACGCAGGCCACTGATTGACAATGATAGAACAAAAGGTAGGAAAGTAGACAGATCAAAGCCATTCAACATAGAATTCAAGATGGTGACTTTTACATACCCATCTAGGCCAGAAGTGACTGTGTTGAGGGACTTCTGTTTAAAGGTCAAAGGTGGAAGCACAGTGGCTCTGGTGGGACCAAGTGGATCAGGGAAGTCAACGGTCATATGGTTGACTCAGAGGTTCTATGATCCTGACCAAGGAAAGGTGATGATGAGTGGGACAGATTTGAGAGAGATCGATGTAAAGTGGTTGAGGAGGCAAATGGCTTTGGTGGGTCAAGAACCTGCACTGTTTGCTGGGAGCATAAGGGAGAATATTGCATTTGGGGACCCAAATGCTTCATGGTCTGAAATTGAAGAGGCTGCAAAGGAGGCTTACATCCACAAGTTCATCAGTGGCCTTCCTCAGGGTTATGAGACACAGGTTGGTGAAAGTGGGGTCCAGTTATCAGGTGGCCAGAAACAACGAATTGCTATTGCAAGGGCCATTTTGAAGAGATCAAGGGTACTTTTGCTTGATGAGGCAAGCAGTGCCTTGGACTTGGAATCAGAGAAGCACATCCAAGAAGCCCTTAAAAATGTTGCCAAAGATGCAACAACCATAATAGTTGCTCACCGTCTTTCCACGATCAGAGAAGCTGATAAGATCGCAGTTATGAGAGACGGGGAAGTGGTGGAGTATGGGAGCCATGACACTCTCATGGCTTCAACACAAAATGGCTTGTATGCTAGCCTAGTTCGAGCTGAAACAGAAGCCAATGCCTTTTCTTGA 4518 0.4396 MDDSFSFDGDSFSSHQRRHYPTPASYHSVSGSFIPSSFHSDATSTTRTARRNRVPTTPFASDDDHSWQEEVSWKFEATGWHHYSTNYGSLLTPWATSPPSDHSRVFRRSANDFYLSRTSGFRGIASSSSYEHSGYGRVELKSYVARDNDQSYFDNGLSTSGFIHQQSSRKSKSSPLAEEDELSMIDYSITEERVISPNVNGHGLESPYLKHGHGDYGGSCYVGHGLPSYDGSHLSGSGGGYTYRHHDIEKHSGYDEEGEEDMDEEDASPPKAVGLFSLFRYSTKWDWMLVFVGCLGALINGGSLPWYSYLFGDLINKISEADKDKKQMMKDVEKICLFMAGLAAVVVVGAYLQITCWRLVGERSAQRIRSEYLRAVLRQDITFFDTDINTGDIMHGIASDVAQIQEVMGEKMAHFIHHIFTFICGYTVGFKRSWKVSLVVFSVTPLTMFCGMAYKALYGGLTAKEEASYRKAGSVAEQAISSIRTVFSFVAESQLAGKYDELLQQSAPIGAKVGFAKGIGMGVIYLITYSTWALAFWYGSVLIAKNELDGGSAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFYVIERIPEIDPYSPEGRKLSGVRGRVELKSVSFAYPSRPDSLILHSLSLIIPSSKTVALVGASGGGKSTIFALIERFYDPTEGIITLDGHDLRTLQVKWLRDQIGMVGQEPILFATSILENVMMGKDDATKEEAIAACIAADAHSFISSLPLSYDTQVGDRGTKLSGGQKQRIALARAMMKDPKILLLDEPTSALDAESESAVQRAIDKISAGRTTIVIAHRIATVKNAHTIVVLEHGSVIEIGDHRQLMSKPGAYHNLVKLATEAISKPLAIENGIQKANDVSIYDKSVAALSRSRYVVDIPMSKDLISMHGVEKQEDMEDDEQDTKAKKYSLSQVWKLQKPELVMLFSGLILGMFAGAILSLFPLVLGISLEVYFGHDTHKMKRDVAHLCLTLVGLGIGCILSMTGQQGLCGWAGSKLTQRVRYILFQSILKQEPGWFDFEENSTGVLVSRLSLDCVSFRSVLGDRFSVLLMGLSSAAVGLGVSFAFNWRLTLVAAAVTPFALGASYINLIINVGPRVDNDSYGKASNLASGAVSNIRTVTTFSAQEQIVKSFDRALSEPRRKSLRRSQLQGLMFGLFQGSMYGAYTLTLWFGAYLVQHDKAKLGDVFKIFLILVLSSFSVGQLAGLAPDTSTAATAIPAVQDIIKRRPLIDNDRTKGRKVDRSKPFNIEFKMVTFTYPSRPEVTVLRDFCLKVKGGSTVALVGPSGSGKSTVIWLTQRFYDPDQGKVMMSGTDLREIDVKWLRRQMALVGQEPALFAGSIRENIAFGDPNASWSEIEEAAKEAYIHKFISGLPQGYETQVGESGVQLSGGQKQRIAIARAILKRSRVLLLDEASSALDLESEKHIQEALKNVAKDATTIIVAHRLSTIREADKIAVMRDGEVVEYGSHDTLMASTQNGLYASLVRAETEANAFS* 1506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0356 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 850 IPR027417 -
Vra9g0356 1505 Pfam ABC transporter transmembrane region 938 1207 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0356 1505 Pfam ABC transporter transmembrane region 290 561 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0356 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 291 579 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0356 1505 Pfam ABC transporter 1278 1425 IPR003439 GO:0005524
Vra9g0356 1505 Pfam ABC transporter 632 781 IPR003439 GO:0005524
Vra9g0356 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1259 1495 IPR003439 GO:0005524
Vra9g0356 1505 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 939 1223 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0356 1505 SUPERFAMILY ABC transporter transmembrane region 278 599 IPR036640 GO:0005524|GO:0016021
Vra9g0356 1505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1255 1496 IPR027417 -
Vra9g0356 1505 CDD ABC_MTABC3_MDL1_MDL2 614 851 - -
Vra9g0356 1505 SMART AAA_5 641 842 IPR003593 -
Vra9g0356 1505 SMART AAA_5 1286 1472 IPR003593 -
Vra9g0356 1505 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 614 850 IPR003439 GO:0005524
Vra9g0356 1505 PANTHER - 96 1504 - -
Vra9g0356 1505 CDD ABC_6TM_Pgp_ABCB1_D1_like 291 587 - -
Vra9g0356 1505 MobiDBLite consensus disorder prediction 7 25 - -
Vra9g0356 1505 MobiDBLite consensus disorder prediction 1 25 - -
Vra9g0356 1505 Gene3D - 1254 1504 IPR027417 -
Vra9g0356 1505 ProSitePatterns ABC transporters family signature. 1398 1412 IPR017871 GO:0005524
Vra9g0356 1505 Gene3D ABC transporter type 1, transmembrane domain 337 1101 IPR036640 GO:0005524|GO:0016021
Vra9g0356 1505 Gene3D ABC transporter type 1, transmembrane domain 244 326 IPR036640 GO:0005524|GO:0016021
Vra9g0356 1505 Gene3D - 612 872 IPR027417 -
Vra9g0356 1505 PANTHER ABC TRANSPORTER B FAMILY 96 1504 - -
Vra9g0356 1505 ProSitePatterns ABC transporters family signature. 753 767 IPR017871 GO:0005524
Vra9g0356 1505 SUPERFAMILY ABC transporter transmembrane region 919 1242 IPR036640 GO:0005524|GO:0016021
Vra9g0356 1505 MobiDBLite consensus disorder prediction 39 61 - -
Vra9g0356 1505 CDD ABC_6TM_Pgp_ABCB1_D2_like 926 1241 - -
Vra9g0356 1505 CDD ABC_MTABC3_MDL1_MDL2 1259 1497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0356 Vra-Chr9 2986568 2994029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0356 967 1502 Calmodulin-binding Proteins AT2G36910 38.104 5.21e-108 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0356 K05658 - gmx:100816700 2565.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0356 9 2986568 2994029 Vra9g0356 9 2986568 2994029 ECH