Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0353 ATGGCCAACAAAGATTCTCCGATGGAACTGTACGAAATCTCTACGGAATCCGAAGGATCCGACTCCGATTCCGACTGGGAGGACTCGGGAGAAGATTCCGATTACGAGTCGCTCGAAGAAAGTCATAGCAAATTCTCAAACCTCTCACTTAAGCACAAGGCAAAAGCGCGCTTTATCGAGGAGAAGGATCGAGGTGAGGAAGAGTTGGTGGTCACTGCATCTGTAAATGATGGAGAGAATTTTGGGAAAGTTCAAAAGTTAATCGAAGAGGGATTGTTGGAGAAATTGAAAGTGGATGAATGCAAGTTGTATTTGAGGAAGAATGGTCTGAGGCTAACTGGAAACAAGGACACACTTATAGAACGCATAAGGGAGCACTTGGAGATTTTAAATGGAGGGGAGAAGAAGTATCCGCCTTCTAGCTTTGTGTTGAATTGTAAAGGTGATGCATGCACTGGTGATGTTGTTTTGTTTGAGCAAAATGTCTATGAAATGTTTAACATCGCATCCAGGAGTGCTAGTGGTCAACCTTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCTAAACAACAGCATACATTTACGATTGAAGTGCTCTGGAGTAAAGGAGAAAAGCCTCTCCCTCCCCTTTACCCCCTACTGATTAAGGGTCGAAACCTTTACAGGCTGAAGACTTTGAGACAGAAATGGGAAGACGAAGCAGAAAGGAAGAAAATATTGATGGAAAAACACTCAAGGGGATCTCTTGCTAGGGCATATAGAGAAGAAAGGATTCAAGAAAAGGAGAAGAGGAAAAATATTAAGGAAAATAGGATCTCCAAAATCGAAGCAAGGAACCAACGTCAATCAAATTCACACATTACAAGGCCACAATATCAACCTCAAGGAACAAATGTAGTCATTAATCCAGAAAACCCTGAATTTCCATCTCGAAATTCAGATTTATCTGTCAATATAATGAAAGAAAGATACTGTATTTTAAATAATCCAGCAGCAACTTTTGGAGGAACATCATTTGGTGTTCAAAGTATGCATAGGAATCACACAAGTGACTTTAGGAATACTTTTGATATTGGTCGTGTGCGAGGAGCAGAAACTGGTGCAAACTATTATGCAGACCCCCATTTCAGAGAAAACCTACCTAGGTTTGTGAACTGCCACCCTAACATGGCTGAAATGGGCACTCATCATAGGATACCTTTGGCAAATGCAAACCATTCTCACCCATTTATGGTCCCCAACAGAGAAAGCTTTAAGATAAATCAGGTGTGCAAACATTATCCCCGTGGAAGGTGCTATTTTGGGGACAACTGCAAATTCATACATGATCTTAGAGACAAAGGGAATGCATGA 1374 0.4156 MANKDSPMELYEISTESEGSDSDSDWEDSGEDSDYESLEESHSKFSNLSLKHKAKARFIEEKDRGEEELVVTASVNDGENFGKVQKLIEEGLLEKLKVDECKLYLRKNGLRLTGNKDTLIERIREHLEILNGGEKKYPPSSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSASGQPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLYPLLIKGRNLYRLKTLRQKWEDEAERKKILMEKHSRGSLARAYREERIQEKEKRKNIKENRISKIEARNQRQSNSHITRPQYQPQGTNVVINPENPEFPSRNSDLSVNIMKERYCILNNPAATFGGTSFGVQSMHRNHTSDFRNTFDIGRVRGAETGANYYADPHFRENLPRFVNCHPNMAEMGTHHRIPLANANHSHPFMVPNRESFKINQVCKHYPRGRCYFGDNCKFIHDLRDKGNA* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0353 457 Gene3D - 420 456 - -
Vra9g0353 457 Pfam SAP domain 93 127 IPR003034 -
Vra9g0353 457 SUPERFAMILY SAP domain 83 128 IPR036361 -
Vra9g0353 457 SUPERFAMILY CCCH zinc finger 427 450 IPR036855 GO:0046872
Vra9g0353 457 SMART c3hfinal6 426 451 IPR000571 GO:0046872
Vra9g0353 457 SMART sap_9 93 127 IPR003034 -
Vra9g0353 457 Gene3D SAP domain 80 139 IPR036361 -
Vra9g0353 457 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 5 453 IPR045124 GO:0003723|GO:0045892
Vra9g0353 457 MobiDBLite consensus disorder prediction 16 35 - -
Vra9g0353 457 Coils Coil 257 285 - -
Vra9g0353 457 MobiDBLite consensus disorder prediction 264 320 - -
Vra9g0353 457 ProSiteProfiles SAP motif profile. 93 127 IPR003034 -
Vra9g0353 457 MobiDBLite consensus disorder prediction 284 320 - -
Vra9g0353 457 Pfam CCCH-type zinc finger 430 450 IPR041367 -
Vra9g0353 457 ProSiteProfiles Zinc finger C3H1-type profile. 425 452 IPR000571 GO:0046872
Vra9g0353 457 MobiDBLite consensus disorder prediction 264 283 - -
Vra9g0353 457 MobiDBLite consensus disorder prediction 1 44 - -
Vra9g0353 457 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 5 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0353 Vra-Chr9 2967797 2970959 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vra9g0353 SAP 5.7e-10 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0353 - - gmx:100815642 594.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0353 9 2967797 2970959 Vra9g0353 9 2967797 2970959 ECH