Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0349 ATGCAGAATCATAGGCTGAAGCAGCAGCAGCAACAACAACAGGCTCTGATGCAGCAAGCACTTCTCCAACAACAGTCTCTCTACCATCCTGGCCTCCTTGCTCCTCCTCAGATTGAACCAATTCCAAGTGGAAATCTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTTGGGAACATCCATACACAGGTAACTGAACCTCTTTTGCAAGAAGTTTTTGCTGGTACTGGCCCAGTTGAAGGTTGTAAACTTATCAGAAAGGAGAAGTCATCCTATGGATTTATTCATTACTTTGATCGCAGATCTGCTGCTCTTGCCATATTATCTCTTAATGGAAGGCATCTATTTGGCCAGCCTATCAAAGTTAATTGGGCATATGCCAGTGGTCAGCGAGAGGACACATCAGGTCATTACAATATTTTTGTTGGTGATCTAAGTCCTGAGGTCACTGATGCGACACTGTTTGCATGCTTTTCTGTCTACACCAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGAGGATTTGGATTTGTTTCATTCCGCAGTCAACAGGATGCACAAAACGCTATAAATGATTTGACTGGTAAATGGCTTGGAAGTAGACAAATACGCTGTAACTGGGCAACTAAAGGTGCTGGTGGTATAGAAGAGAAGCAAAATTCAGATGCAAAAAGTGTGGTGGAACTAACAAATGGCTCATCTGAAGATGGTAAAGAGGTGTCTAATAGTGATGCTCCTGAGAACAATCTTCAGTATACTACGGTTTATGTGGGTAACCTTGCTTCAGAGGTAACTCAACTCGATCTCCATCGCCACTTCCATTCTCTTGGGGCTGGCGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGGTTTGGTTTTGTGAGGTACAGTAATCATGCTGAAGCAGCTCTGGCTATTCAGATGGGGAATGCCCAATCTCTTCTTCTTGGAAAACAAATTAAGTGCTCTTGGGGGAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCCCTTCCCCCACCTGCTGCTGCATCACTGCCGGGGCTGTCTCCAAATGATCTTTTGGCATACGAGCGACAACTAGCCATGAGTAAGATGGGGAGCGTGCATGCTGCCTTGATGCATCCCCAAAGCCAACATCCTCTTAAACAAGCAGCAGCCATTGGAGCCAGCCAAGCAATATATGATGGTGGGTTCCAGAATGTTGCAGCTGCACAGCAAATGATGTATTACCAGTAA 1269 0.4586 MQNHRLKQQQQQQQALMQQALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFAGTGPVEGCKLIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYTSCSDARVMWDQKTGRSRGFGFVSFRSQQDAQNAINDLTGKWLGSRQIRCNWATKGAGGIEEKQNSDAKSVVELTNGSSEDGKEVSNSDAPENNLQYTTVYVGNLASEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRYSNHAEAALAIQMGNAQSLLLGKQIKCSWGSKPTPPGTASNPLPPPAAASLPGLSPNDLLAYERQLAMSKMGSVHAALMHPQSQHPLKQAAAIGASQAIYDGGFQNVAAAQQMMYYQ* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0349 422 SUPERFAMILY RNA-binding domain, RBD 40 134 IPR035979 GO:0003676
Vra9g0349 422 MobiDBLite consensus disorder prediction 223 255 - -
Vra9g0349 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Vra9g0349 422 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 11 420 - -
Vra9g0349 422 Gene3D - 237 341 IPR012677 -
Vra9g0349 422 Gene3D - 1 139 IPR012677 -
Vra9g0349 422 SMART rrm1_1 263 333 IPR000504 GO:0003723
Vra9g0349 422 SMART rrm1_1 142 215 IPR000504 GO:0003723
Vra9g0349 422 SMART rrm1_1 57 126 IPR000504 GO:0003723
Vra9g0349 422 CDD RRM2_PUB1 142 216 - -
Vra9g0349 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 337 IPR000504 GO:0003723
Vra9g0349 422 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Vra9g0349 422 MobiDBLite consensus disorder prediction 336 355 - -
Vra9g0349 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 321 IPR000504 GO:0003723
Vra9g0349 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Vra9g0349 422 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Vra9g0349 422 MobiDBLite consensus disorder prediction 233 255 - -
Vra9g0349 422 Gene3D - 140 221 IPR012677 -
Vra9g0349 422 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 11 420 - -
Vra9g0349 422 SUPERFAMILY RNA-binding domain, RBD 135 223 IPR035979 GO:0003676
Vra9g0349 422 CDD RRM3_TIA1_like 262 337 - -
Vra9g0349 422 CDD RRM1_TIA1_like 58 128 - -
Vra9g0349 422 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0349 Vra-Chr9 2925305 2931471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0349 51 338 Eukaryotic Initiation Factors Gene Family AT4G34110 28.053 2.04e-21 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0349 K13201 - gmx:100781227 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0349 9 2925305 2931471 Vra9g0349 9 2925305 2931471 ECH