Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0347 ATGGCCATAGCTCCGGCAACAATTCTCCAGCCAACTCTCATGATCATCGTCACTTTGCCTGTGATATATTCCATGACAGAAGCTGAAGCTTTGGTAAGTCTCAAAAGCACTTTCACCAACGCTCAACTTTTAGATGGTTGGGTGCCTGGTTCTGCACCTTGTAGTGATGATCAATGGGAAGGTGTTGTTTGCAATAATGGCCTTGTCACGGGGCTTCGCCTTGGAGGAATAGGGTTAGTCGGGGAAATACACGTTGATCCATTGCTTGAACTCAAGGGTCTTCGAACTATTAGCCTTAACAACAACTCTTTCACAGGTTCCATGCCAGAGTTCAACCGAATAGGCTTTTTGAAAGCCTTGTATTTGCAAGGAAACAAGTTTTCTGGGGATATTCCTCAGGAATACTTCCAGAGAATGAGGTCTTTGAAGAAAGTGTGGCTTTCTGATAACCAATTCACCGGGAATATTCCACAATCATTGACTGAGATTTCTAGTCTTATGGAGTTGCACCTTGAAAATAACCAGTTTAGTGGAACCATTCCGGATTTCAAAAACCCAACATTGGTGGACATAAACGTTTCCAACAACAAATTGGAAGGTGAAGTTCCAGCTAGTTTGTCGAGATTCAGTGAGAACAGGTTTTCTGGGAATTCTGGTCTTTGTGGTGAGAAGGTTGGCAAATCATGTGAAAAGCCAGCGGAGGTCCAAAGTCCTGCTCCCATTGATGCATCGGATGCTGGTGGTGATTCGCCTGTGCCACATGGTAATACCCCATGGGAGGTTGCTGCCATTATAGTAGCGAGTGTAGTGCTTGTTTCAATAGTTGTATTTTTCATTGTGAGAACAAGGAAAAAGAAGGAGGAGGAGCGCTTTGATATCCTTGGAAATGATGCTAATGGTGGTGGTTCAGTGGAAGTTCAAGTGGCTACAACGGTTAAAAGGGATGTGGATGCAAATACATTGCCAGCAGTTAAAAAATCATCGTCCAGAAGAGGATCTGCAGGTGGTCAAAGTAAAGGCGTTGGAGAACTTGTGATAGTGAATGATGAGAAGGGTGTGTTTGGATTGCCAGATTTGATGAGGGCAGCAGCAGAAGTTCTGGGAAACGGAAGCTTTGGATCTTCTTACAAAGCCGTCATGGCTAATGGAGTGGCAGTGGTGGTGAAAAGGACCAGAGAGATGAATGTTTTGGAAAAAGATGGTTTTGATGCAGAGATGAGGAAGCTCACTTCGCTTAAACACTGGAATATATTGACCCCTTTAGCTTATCATTTCAGAAAGGATGAGAAACTAGTGATCTCTGAGTATGTTCCCAAAGGCAGTCTACTGTTTTCACTTCATGGTGATAGAGGATCATCGCATAACGAGCTGGATTGGCCTGCACGTATGAAGGTTATAGGTGGAATTGCGGAAGGGATGAATTATCTTCACAAAGAACTTGGTTCCTCTGATCTCCCACATGGGAATCTGAAGTCCAGCAACGTTCTTCTGGGATCAGAGAATGAAGCACTGCTTGTAGATTACGGGTTCAGCGGCATGGTTAACCCTTCAAGTGCTGCACAGACACTATTTGCTTACAAGGCACCAGAGGCAGCAGAAAACGGAGAAATATCACATAGCTGTGATGTATACTGTCTCGGGGTTGTGATACTTGAGATACTGACTGGGAAATTTCCTTCACAATATCTTAGCACGGGGAAAGGAGGAACTGATGTGGTGCAATGGGTTGAAACAGCAATCTCAGAGGGAAGGGTGGGTGAAGTGGTTGATCCTGAAATTGCAAAGTGTAGAAAATGGGTAGGTGAGATGGAGCAACTCCTGCATATCGGTGCTGCTTGCACCAGAAGCAACCCTCTGCAACGGTTAAGCATGGAGGAAGCCTTTAGAAGGATAGATGAGGTAAGATCCGAGAGTGGGCTTGGCAAAGAATCAAGAACTATAGAAGTGTTGCCATCTTTGGTAGATGACTATGAAGATGCACAACAATTTGAGAGCCAAGGACATTTTGACAACTCACACAGGAGACATGGAACAGATAGCTTCGGAAGTGTCGATAATATTGAACTTGGCAACTCCTAG 2079 0.4444 MAIAPATILQPTLMIIVTLPVIYSMTEAEALVSLKSTFTNAQLLDGWVPGSAPCSDDQWEGVVCNNGLVTGLRLGGIGLVGEIHVDPLLELKGLRTISLNNNSFTGSMPEFNRIGFLKALYLQGNKFSGDIPQEYFQRMRSLKKVWLSDNQFTGNIPQSLTEISSLMELHLENNQFSGTIPDFKNPTLVDINVSNNKLEGEVPASLSRFSENRFSGNSGLCGEKVGKSCEKPAEVQSPAPIDASDAGGDSPVPHGNTPWEVAAIIVASVVLVSIVVFFIVRTRKKKEEERFDILGNDANGGGSVEVQVATTVKRDVDANTLPAVKKSSSRRGSAGGQSKGVGELVIVNDEKGVFGLPDLMRAAAEVLGNGSFGSSYKAVMANGVAVVVKRTREMNVLEKDGFDAEMRKLTSLKHWNILTPLAYHFRKDEKLVISEYVPKGSLLFSLHGDRGSSHNELDWPARMKVIGGIAEGMNYLHKELGSSDLPHGNLKSSNVLLGSENEALLVDYGFSGMVNPSSAAQTLFAYKAPEAAENGEISHSCDVYCLGVVILEILTGKFPSQYLSTGKGGTDVVQWVETAISEGRVGEVVDPEIAKCRKWVGEMEQLLHIGAACTRSNPLQRLSMEEAFRRIDEVRSESGLGKESRTIEVLPSLVDDYEDAQQFESQGHFDNSHRRHGTDSFGSVDNIELGNS* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0347 692 Gene3D Phosphorylase Kinase; domain 1 346 436 - -
Vra9g0347 692 ProSiteProfiles Protein kinase domain profile. 361 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0347 692 Gene3D Ribonuclease Inhibitor 21 114 IPR032675 -
Vra9g0347 692 SUPERFAMILY Protein kinase-like (PK-like) 365 629 IPR011009 -
Vra9g0347 692 SUPERFAMILY L domain-like 51 209 - -
Vra9g0347 692 Gene3D Transferase(Phosphotransferase) domain 1 437 644 - -
Vra9g0347 692 MobiDBLite consensus disorder prediction 666 692 - -
Vra9g0347 692 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Vra9g0347 692 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 639 - -
Vra9g0347 692 Gene3D Ribonuclease Inhibitor 116 231 IPR032675 -
Vra9g0347 692 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 9 639 - -
Vra9g0347 692 Pfam Protein kinase domain 365 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0347 692 Pfam Leucine rich repeat N-terminal domain 27 65 IPR013210 -
Vra9g0347 692 MobiDBLite consensus disorder prediction 231 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0347 Vra-Chr9 2886414 2888613 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0347 6 634 Receptor kinase-like Gene Family AT3G42880 44.359 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra9g0347 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0347 - - var:108346415 1281.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0347 9 2886414 2888613 Vra9g0347 9 2886414 2888613 ECH