Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0332 ATGCCTTCAAAGAGGCTTCAATGGAGATCCTTAATACTTGGTTGTTTCAAGGCCAAGCACCAGCAACCCTTGGATGCTGCAAACATAGTTTCGAAAAAGTCTTCATCCAGTAGAATCTTCCTCTCTGATTTAAGCCTCAGCGATTATTCATCACTCTCTATCATGAGTGATTTGTCCAATTCTCTGGTGGGATCAAATCTGCGTATTTTCACCTACCAGGAGCTCAAGGAGATCACGCACAGCTTTAGCAAATCCAACATTCTTGGGGAAGGTGGGTTTGGGAAAGTGTATAAAGGCTTCATCGATGATAATTTTAAGCGTGGGTTGAAAGCTCAGGTTGTGGCAGTTAAAGCCTTAAACTTGGATGGAAAACAAGGTCACAGAGAGTGGTTGGCTGAAGTAATCTTTCTGGGGCAGTTGAAACATCGCCATCTGGTTAACTTAATTGGCTATTGCTGCGAAGATGAGCATAGGCTTCTTGTGTATGAATACATGGAGAGGGGCAATCTAGAGGAAAAGCTTTTCAAAGGTTATGTGGCAGCTTTGCCATGGCTAACGAGAATCAAAATAGCACTTGGGGCAGCTAAGGGACTTATGTTTCTCCATGAAGAAGAAAAACCAGTCATATACAGAGATTTTAAGTCCTCAAACATCCTACTGGACGCTGATTACAATGCCAAGCTCTCAGATTTTGGTTTAGCTATAGATGGACCAGAAAAAGATCAAACACACATTACAACTCGTGTTATGGGCACGCAAGGTTATGCAGCCCCTGAGTACATCATGACAGGCCATTTGACTACCATGAGTGATGTATATAGCTTTGGAGTTGTACTGTTAGAGCTCCTCACAGGAAAGAAATCCGTGGACAAAAAACGACCCAGCAGAGAGCAGGATTTGGTGGAATGGGCAAGGCCTTTGTTGAAGGATTCCTACAAACTAGAGAGAATAATGGACCCAAGACTTGAGGATCAGTACTCAAGTGAAGGGGCTAAAAAGTTTGCAGCTTTGGCTTACCAGTGTTTGAGCCACCATGCAAAGGGTAGGCCCACCATGAGAACAGTGGTTCGGACCTTAGAGCCTCTCTTGAAACTGAAAGACATCCCAGTTGGCCCTTTTGTGTATGTGGTGCCCAGTGAGGAAGACAAAGACATACCCAAAATGAGTGAAAAAGTAACAGAAAATGACCATGTTGTTGAGATCAACCAAATTGATGAGTTAAAAAAACCCAAAGAAGAAGAAAAGGCAGAGAAAAAAGAAAAGGGTCACCACCGGCAACGAAGAAGTCGTCGCCACAAACGTCGTGTTAAGCCCCTGAGGTCTCAAGCCGTTTACTCTGACACTGCTCTGTACAAAACTCTTGGCACAAATCTTTACTCTCCCAAAGAAGCACAGTAA 1398 0.4363 MPSKRLQWRSLILGCFKAKHQQPLDAANIVSKKSSSSRIFLSDLSLSDYSSLSIMSDLSNSLVGSNLRIFTYQELKEITHSFSKSNILGEGGFGKVYKGFIDDNFKRGLKAQVVAVKALNLDGKQGHREWLAEVIFLGQLKHRHLVNLIGYCCEDEHRLLVYEYMERGNLEEKLFKGYVAALPWLTRIKIALGAAKGLMFLHEEEKPVIYRDFKSSNILLDADYNAKLSDFGLAIDGPEKDQTHITTRVMGTQGYAAPEYIMTGHLTTMSDVYSFGVVLLELLTGKKSVDKKRPSREQDLVEWARPLLKDSYKLERIMDPRLEDQYSSEGAKKFAALAYQCLSHHAKGRPTMRTVVRTLEPLLKLKDIPVGPFVYVVPSEEDKDIPKMSEKVTENDHVVEINQIDELKKPKEEEKAEKKEKGHHRQRRSRRHKRRVKPLRSQAVYSDTALYKTLGTNLYSPKEAQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0332 465 MobiDBLite consensus disorder prediction 421 439 - -
Vra9g0332 465 Gene3D Phosphorylase Kinase; domain 1 53 164 - -
Vra9g0332 465 ProSitePatterns Protein kinases ATP-binding region signature. 88 117 IPR017441 GO:0005524
Vra9g0332 465 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Vra9g0332 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vra9g0332 465 Gene3D Transferase(Phosphotransferase) domain 1 165 368 - -
Vra9g0332 465 Pfam Protein tyrosine and serine/threonine kinase 85 359 IPR001245 GO:0004672|GO:0006468
Vra9g0332 465 ProSiteProfiles Protein kinase domain profile. 82 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0332 465 MobiDBLite consensus disorder prediction 396 443 - -
Vra9g0332 465 PANTHER OS01G0588500 PROTEIN-RELATED 29 420 - -
Vra9g0332 465 CDD STKc_IRAK 88 362 - -
Vra9g0332 465 MobiDBLite consensus disorder prediction 396 420 - -
Vra9g0332 465 PANTHER BNAA02G16030D PROTEIN 29 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0332 Vra-Chr9 2725867 2728433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0332 65 364 Receptor kinase-like Gene Family AT3G58690 51.961 2.09e-100 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vra9g0332 PK_Tyr_Ser-Thr 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0332 - - gmx:100790454 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2626 7 46497705 46500313 Vra9g0332 9 2725867 2728433 ECH
Vra9g0332 9 2725867 2728433 Vra9g0332 9 2725867 2728433 ECH