Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0327 ATGTCCCATCAGGAGCAAGCCTTAGTATCTCTTCTCTCCCAACTCGCCCTTTCCTTCGACGGCGCCGTTTTGGGCTTCGCCTTGGCCTACGCCGCCATCCGCACTTTCTTCAAATTCTCCGCCACCTCTGCCGCCCTCCGCAAGCTCCGCCGCGCACCTTACCTCTCTGTTTCCGACCTCCGATCACTCCTCGCCGATTCTCCCCCTGACGCTGACTCTACCTCTGACGGTGGTACAATCGTAATTGTTCGCGGCACCGTTGATGCCAAGTCTGCCGTCGATGGCTCCTGGAAAACTCTCAGACCGGGCGTCTTGGTCTCTCGAGAGTCGGGTGATAAAGGCGTCATCCTTCAAAGAACTCAAACGTGTATATACAATGAATGGAAAGGATTATTAGGATGGACTTCTGATCTTCGGGCCTTTATTGCAAGATCTTGGAGAAAGCAAGAGTCTACATCTTTAAGGAAGGTGCCTTTTGTTCTGATTGATGTTGGACGGCGACCATCTACTCCCGAGTATGTTGTTGTCAACATGGATGGCTCAAGACATCCGTTACCTTTAACAACAGTTTATCATAAATTGCAACCAATAAATGCTTCTCCTTATACTTTCTTGCAAGCGCTTTTTGGGCATGAATATCCCGTTGGACTGCTAGATGAAGAGAAAATACTTCCATTGGGGAAGGATATCACTGTTGTCGGCCTTGGTAGTTTAAATAATGGAGTTGCTGAAATTAAGTCATGCAAAGATCTACCATATTTTTTATCTGACTTGAGCAAAGATCAGATGATAGTGGATCTTTCCATAAAAACAAAAATTCTGTTTTGGGGTGGCATTGCTATCGGTTCAATGTCAGTTGGGATCCTTGGCTATGCCGTTGTGAGGAACTGGAATAAGTGGAAACAGTGGAAGCTACAAAGGCAGCTCCAGCAACAAAGGCAAGCAGTGAATAATGTTGAACCTCAGATAGATGATGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTCATATGTGTGATGAGGAGAAGGCGTTCTGCCTTCATCCCCTGTGGGCATCTTGTGTGTTGCCAAGGGTGTGCCATAGCAGTTGAACGTGAAGTGTTACCTAAATGTCCGGTTTGTCGTCAGGAGATTCGAAATTCAGTGCGGATTTTTGAAACATGA 1170 0.4641 MSHQEQALVSLLSQLALSFDGAVLGFALAYAAIRTFFKFSATSAALRKLRRAPYLSVSDLRSLLADSPPDADSTSDGGTIVIVRGTVDAKSAVDGSWKTLRPGVLVSRESGDKGVILQRTQTCIYNEWKGLLGWTSDLRAFIARSWRKQESTSLRKVPFVLIDVGRRPSTPEYVVVNMDGSRHPLPLTTVYHKLQPINASPYTFLQALFGHEYPVGLLDEEKILPLGKDITVVGLGSLNNGVAEIKSCKDLPYFLSDLSKDQMIVDLSIKTKILFWGGIAIGSMSVGILGYAVVRNWNKWKQWKLQRQLQQQRQAVNNVEPQIDDDEIEDVPDGQLCVICVMRRRRSAFIPCGHLVCCQGCAIAVEREVLPKCPVCRQEIRNSVRIFET* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0327 389 Pfam E3 Ubiquitin ligase 144 288 IPR022170 GO:0004842|GO:0006996|GO:0016567
Vra9g0327 389 Pfam Zinc finger, C3HC4 type (RING finger) 335 382 - -
Vra9g0327 389 SUPERFAMILY RING/U-box 331 383 - -
Vra9g0327 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 322 388 IPR013083 -
Vra9g0327 389 ProSiteProfiles Zinc finger RING-type profile. 337 377 IPR001841 -
Vra9g0327 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 - -
Vra9g0327 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 388 IPR044247 GO:0004842
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0327 334 386 C3H Transcription Factor Family AT3G06140 41.509 3.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0327 K15688 - gmx:100811939 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0327 9 2676087 2682028 Vra9g0327 9 2676087 2682028 ECH