Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0326 ATGATCATGGAACCAAATCCAACATCAGATCATAGTTTGGACTGGTTTGAAGGTTCTGTTTCTTTCTTTCCACTTCCACCATTCTTAGACGATCCATATAACTGTACTGACATCCAACTGTGGGATCAAGACATAAGCAGCCATTATCAGACTGATGCTAATACCAGTTCCCCTAATGCCACCAACATTGCAACTAGCACAACACCCCCTGAGCCTTGTGCTTCTAACAACCTTCCACTCTCTGATTTGCCCAAGAAAAGAAGTGCCACTGATGATTCAAGTCTCAGACAACCACAGAACCACAAGCACAAGAAAATCAAGAGCAAACCATTGAATAATGAAGCAGATAGTGGAGACGCAGAAGGGACAACCACAGTTAGAAAACCTGGTGGGAACAAGAGAGGTGCTGCTAAGGGTGTGGCAAATAACTGCAACAACAAAGAAGGAAGGTGGGCTGAACAGTTGCTCAACCCTTGTGCTGCAGCCATAACTGGTGGAAATCTGACCCGTGTGCAACACCTCTTGTATGTTCTCCATGAGTTAGCTTCACCTACTGGTGATGCTAACCACAGGCTTGCAGCACATGGTCTTAAAGCACTGACACACCACTTATCGTCTTCTCTAGCATCTACCTCTTCAGGGTCCATGACTTTTGCATCTACTGAGCCACGGTTCTTTCAAAAGACACTACTCAAGTTCTATGAGGTTAGCCCTTGGTTTTCTTTTCCAAACAACATAGCAAATGCTTCCATCCTTCAAGTTCTTGGGGAAGACAATGACAATTCGCGCACCCTTCACATCCTTGACATTGGAGCCTCTCATGGAATGCAATGGCCAACATTTCTAGAGGCCCTCAGTCGCAGACCTGGTGGACCTCCTCCACTGGTTCGCCTCACTGTGGTCACGGCTTCTTCCACTGAAATTGACACCCCATTTTCTATTGGTCCTCCCGGTGACAACTTCTCATCTAGACTCCTTGGTTTTGCTCAGTTAATGAACGTGAATTTGCAGATTAAAAGGCTAGATAATTGTCCATTACATACACTGAGTGCTCAAAGTGTTGACACATCCCCGGATGAAATATTTGTTGTTTGTGCGCAGTTTAGGCTGCATCAGTTAAGTCACAATAGCACTGATGAAAAGAGAGAGTTTCTGAAAGTGGTGAGGAACATGGAGCCCAAAGGGGTGATACTAAGTGATAACAACATGGAATGTTGTTGCAGTGGTTGTGGGGATTTTGCCATGGGGTTCTCTCGAAGGGTGGAGTACTTGTGGAAGTTTTTGGACTCAACAAGCTCGGCGTTTAAGGGTCGTGACAGTGATGAAAGGAGAGTGATGGAAGGTGAGGCAGCAAAGGCATTGACAAACCAGCGAGAGATGAATGAAGGGAAGGAAAAATGGTGTGAGAGAATGAAAGAAGCCGGGTTTGTGGGGGAAGTACTTGGTGAGGATGCAATAGATGGAGGTAGAGCTTTGCTGAGAAAGTATGATACTAATTGGGAGATGAAAGTTGAAGATGACAATACAAGTGTAGGACTATGGTGGAAGGGGCAACCTGTTTCTTTCTGCACCTTGTGGAAGCTGGATGCGAATGATCAGAGCTCAACATTCACATCATCATAA 1623 0.4529 MIMEPNPTSDHSLDWFEGSVSFFPLPPFLDDPYNCTDIQLWDQDISSHYQTDANTSSPNATNIATSTTPPEPCASNNLPLSDLPKKRSATDDSSLRQPQNHKHKKIKSKPLNNEADSGDAEGTTTVRKPGGNKRGAAKGVANNCNNKEGRWAEQLLNPCAAAITGGNLTRVQHLLYVLHELASPTGDANHRLAAHGLKALTHHLSSSLASTSSGSMTFASTEPRFFQKTLLKFYEVSPWFSFPNNIANASILQVLGEDNDNSRTLHILDIGASHGMQWPTFLEALSRRPGGPPPLVRLTVVTASSTEIDTPFSIGPPGDNFSSRLLGFAQLMNVNLQIKRLDNCPLHTLSAQSVDTSPDEIFVVCAQFRLHQLSHNSTDEKREFLKVVRNMEPKGVILSDNNMECCCSGCGDFAMGFSRRVEYLWKFLDSTSSAFKGRDSDERRVMEGEAAKALTNQREMNEGKEKWCERMKEAGFVGEVLGEDAIDGGRALLRKYDTNWEMKVEDDNTSVGLWWKGQPVSFCTLWKLDANDQSSTFTSS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0326 540 ProSiteProfiles GRAS family profile. 143 527 IPR005202 -
Vra9g0326 540 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 4 527 IPR005202 -
Vra9g0326 540 PANTHER NODULATION-SIGNALING PATHWAY 1 PROTEIN-LIKE 4 527 IPR030015 -
Vra9g0326 540 MobiDBLite consensus disorder prediction 85 99 - -
Vra9g0326 540 MobiDBLite consensus disorder prediction 49 75 - -
Vra9g0326 540 MobiDBLite consensus disorder prediction 49 139 - -
Vra9g0326 540 Pfam GRAS domain family 153 527 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0326 Vra-Chr9 2672993 2675257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0326 1 527 GRAS Transcription Factor Family AT3G13840 51.920 7.61e-176 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vra9g0326 GRAS 2.3e-74 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0326 - - var:108347302 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0326 9 2672993 2675257 Vra9g0326 9 2672993 2675257 ECH