Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0320 ATGATGAGTGCAACTGCAACTGCCAGAAATAGGTCTCCTTTCACACCATCTCAGTGGCAAGAGCTTGAGCAACAAGCTCTTGTTTTCAAATACATGGTCACAGGAACACCTATCCCACCAGATCTCATCTACTCGATTAAAAGAAGTCTAGACTCTTCAATTTCTTCCAGACTCTTTCCACATCATCCAATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCGAAGGAAGCATATCCAGACTCAAAGTACTGTGAAAGACACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCAGCAACAAGCACCGCCACTAACACCTCCCAAACAATCCCATCTTATACCAGAAACCTTTCCTTGGCAAACCCCACCATAACTTCACCCTCTTTCCCTTTCTCTCCTTTGCCCTCTTCTATGCCCTGTGACTCCCAACCCTTTTCCCACTCCTACCAAAACCCTTCTCTCAATCCCTTTTTCTATGCCCAATCAACCTCCTCTAGACCCCCAGATTCTGATTTTTCACCTCAAGATGCCACTACCCACCAGCTATTCATGGACTCTGCTTCTTATTCTCATGATGAGAAGGATTACAGGCATGTTCATGGAATAAGGGAAGATGTGGATGAGAGAGCTTTCTTCCCGGAAGCTTCAGGATCAGCGAGGAACTATTCTGACTCTTATCAGCCGCTATCAATGAGCTCCTACAAGTCCTATTCAAACTCCAGCTTTCAGAACATCAATGATGCCACAAACCAAAGACAACAAGAGCAACAACACTGCTTTGTTTTGGGGACTGACTTCAAATCAACGAGGCCAAGCAAAGAGAAAGAAGCTGAGACAACAAGCCAGAGACCCCTTCATCGTTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACCGATGAATGA 1020 0.4578 MMSATATARNRSPFTPSQWQELEQQALVFKYMVTGTPIPPDLIYSIKRSLDSSISSRLFPHHPIGWGCFEMGFGRKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEVSSATSTATNTSQTIPSYTRNLSLANPTITSPSFPFSPLPSSMPCDSQPFSHSYQNPSLNPFFYAQSTSSRPPDSDFSPQDATTHQLFMDSASYSHDEKDYRHVHGIREDVDERAFFPEASGSARNYSDSYQPLSMSSYKSYSNSSFQNINDATNQRQQEQQHCFVLGTDFKSTRPSKEKEAETTSQRPLHRFFGEWPPKNTDSWLDLASNSRIPTDE* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0320 339 MobiDBLite consensus disorder prediction 294 308 - -
Vra9g0320 339 MobiDBLite consensus disorder prediction 111 141 - -
Vra9g0320 339 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra9g0320 339 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra9g0320 339 PANTHER GROWTH-REGULATING FACTOR-LIKE PROTEIN 6 338 - -
Vra9g0320 339 MobiDBLite consensus disorder prediction 292 339 - -
Vra9g0320 339 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Vra9g0320 339 Pfam WRC 79 121 IPR014977 -
Vra9g0320 339 PANTHER - 6 338 IPR031137 GO:0005634|GO:0006351|GO:0032502
Vra9g0320 339 Pfam QLQ 13 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Vra9g0320 339 MobiDBLite consensus disorder prediction 119 141 - -
Vra9g0320 339 MobiDBLite consensus disorder prediction 325 339 - -
Vra9g0320 339 MobiDBLite consensus disorder prediction 183 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0320 Vra-Chr9 2590683 2593054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0320 1 317 GRF Transcription Factor Family AT3G13960 37.802 3.00e-65 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Vra9g0320 WRC 1.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0320 - - vun:114166369 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0320 9 2590683 2593054 Vra9g0320 9 2590683 2593054 ECH