Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0319 ATGAATAACTGGTTGGGATTCTCTCTCACTCCCCACTTGAGGATTGATGAAGAATTTGGGAGAGAAAACCAAGAGCGTGGAGAAGAAGGAGAAGGAGGAGGAGGGTATCATCCTCGTCCTTCTTCTCACCCTCACTTGTCTGTTATGCCTTTGCGCTCTGATGGTTCTCTCTGTGTTGCTGACTCTTTCAGTCACTCTGCCACTCCTCAAGAATGGAGGTATGATAGTGCAATAGGTGGAGGGAATTCCAATGAAAAAGGTCCAAAGCTTGAGGACTTTTTGGGCTGTTACTCAAACTCCCCCAATAAAGTCTTTTGTCAAGATTCTCAACATGACCAAAACCAAAGCCAGAGCAATGTTTCCAAAATCAATGTTAATGTGGCACCAAACTTTTGCACCAATGCTGATATTGAAACTGGGGATTGCCTCACAAACCCTTCTTCCTTGCTTCAATCTTTCCATGCATACAATGATAACCCACATGCCCTTATCCCGACCAATGGCATGTACAAGTCCTGGTTGGCGCAAACTCAGTTTTCTGATGTAAAGCCTTCAACTGAGGCAAATGGGTGTAATTTCCAATCACTGTCTCTCACTATGAGCCCCACTGTGCAAAATGGGGTGGGAGCAATTTCCTCTGTTCAAGCTCTTGATGACAATAGGAAACGGGCCATGGCTAAATCTCATGCTAGAGAGCCAGTTCCTCGCAAATCCATTGACACTTTTGGACAGAGAACCTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGGAGATATGAGGCCCATTTATGGGACAACAGTTGCAGAAAGGAAGGGCAGACAAGGAAAGGAAGGCAAGTCTACCTTGGTGGTTATGATAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTAGCTGCACTCAAGTATTGGGGTCCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGCACATGACCAGGCAAGAATTTGTCGCCAATTTAAGAAGGAAGAGCAGTGGATTTTCAAGAGGGGCATCTGTGTATAGAGGTGTCACAAGGTATGGACTAAAGCACCATCAACATGGAAGGTGGCAGGCCCGAATTGGAAGGGTTGCAGGAAACAAGGACTTGTATCTTGGTACATTTAGCACTCAAGAAGAAGCTGCCGAAGCATACGATATTGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACCAACTTTGACATAAGTAGGTATGACGTGAAGAGAATCTGCTCAAGTTCCACACTGATTGCAGGAGATCTTGCAAAGCGGTCCCCCAAAAAAGAGTCACCAGCTTCTGTTGCTGCGGATGACATCAACACAAGCAGTTCTTCTGTGCCGTCTCAGCCAACTTCTTTGGCAATAACCGATGCTGAACATTCTGATGAGTTGTCCAACATGATGTGGAATGCCAACAACAGTGATGAACAAGCAAACAACGAGAGTGTTAACATGAACAATGTGAGTGAATCATCACAGCAAGTTTCTCCAAGCAACAACAATAAGGTTGGTTTGAACCATGAAAGTCCTCCCAAGTGTTCTGTGGGGCTACCGAACGAGTTTGGAGTGAGTGGAGCAGATTATGGACATGGGTACTTCAGCCTGGAAGGACCAAAATATGATGATGATGACGATGATGATGATGGGAACACTGAAAACGACCACATGAGCAGCAACAGGCTTGGAAACATGGGACTTGTTAATCAAGTTCCGATGTTTGCTTTGTGGAATGAATGA 1770 0.4486 MNNWLGFSLTPHLRIDEEFGRENQERGEEGEGGGGYHPRPSSHPHLSVMPLRSDGSLCVADSFSHSATPQEWRYDSAIGGGNSNEKGPKLEDFLGCYSNSPNKVFCQDSQHDQNQSQSNVSKINVNVAPNFCTNADIETGDCLTNPSSLLQSFHAYNDNPHALIPTNGMYKSWLAQTQFSDVKPSTEANGCNFQSLSLTMSPTVQNGVGAISSVQALDDNRKRAMAKSHAREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSTYEKELEEMKHMTRQEFVANLRRKSSGFSRGASVYRGVTRYGLKHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPKKESPASVAADDINTSSSSVPSQPTSLAITDAEHSDELSNMMWNANNSDEQANNESVNMNNVSESSQQVSPSNNNKVGLNHESPPKCSVGLPNEFGVSGADYGHGYFSLEGPKYDDDDDDDDGNTENDHMSSNRLGNMGLVNQVPMFALWNE* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0319 589 SUPERFAMILY DNA-binding domain 350 414 IPR016177 GO:0003677
Vra9g0319 589 MobiDBLite consensus disorder prediction 15 33 - -
Vra9g0319 589 SMART rav1_2 248 320 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 SMART rav1_2 350 418 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 Pfam AP2 domain 248 306 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 Pfam AP2 domain 350 404 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 509 - -
Vra9g0319 589 MobiDBLite consensus disorder prediction 15 50 - -
Vra9g0319 589 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 4 509 - -
Vra9g0319 589 MobiDBLite consensus disorder prediction 485 513 - -
Vra9g0319 589 PRINTS Ethylene responsive element binding protein signature 249 260 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 PRINTS Ethylene responsive element binding protein signature 394 414 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 SUPERFAMILY DNA-binding domain 247 316 IPR016177 GO:0003677
Vra9g0319 589 MobiDBLite consensus disorder prediction 432 463 - -
Vra9g0319 589 CDD AP2 247 316 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 MobiDBLite consensus disorder prediction 446 463 - -
Vra9g0319 589 MobiDBLite consensus disorder prediction 545 574 - -
Vra9g0319 589 Gene3D AP2/ERF domain 247 316 IPR036955 GO:0003700|GO:0006355
Vra9g0319 589 Gene3D AP2/ERF domain 350 414 IPR036955 GO:0003700|GO:0006355
Vra9g0319 589 ProSiteProfiles AP2/ERF domain profile. 350 412 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 ProSiteProfiles AP2/ERF domain profile. 248 314 IPR001471 GO:0003700|GO:0006355
Vra9g0319 589 CDD AP2 349 414 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0319 Vra-Chr9 2569339 2573178 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0319 1 437 AP2-EREBP Transcription Factor Family AT1G72570 50.939 1.56e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vra9g0319 AP2 4.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0319 K09285 - gmx:100805489 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0319 9 2569339 2573178 Vra9g0319 9 2569339 2573178 ECH