Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0317 ATGGGAAGAAGTCCTTGTTGTTCTAAAGAAGGTTTGAACAAAGGAGCATGGACAGCTCTGGAAGATAAAATTCTCACAGAATACATTAACATCCATGGCGAAGGAAAATGGAGACACTTGCCCAAAAGAGCAGGTCTTAAGAGATGCGGGAAAAGTTGCAGACTGAGATGGTTGAATTATCTAAGACCTGGCATTAAGAGAGGCAACATTACTAATGATGAAGAGGAGCTAATTATCAGGCTTCACAATCTTCTAGGAAACAGGTGGTCCTTGATTGCTGGACGGCTTCCAGGACGAACAGACAATGAAATCAAGAATTATTGGAACACCAACATTGGAAGGAAACTTCAGAATGGCACCCCAGGATACTCCATTACAAATGGTGGTGCACGAAGCACTTTAAACACGGTTCAGCATGATCAGAACGTGAAGAACCAAGAATGGCAATACGACAAAGGTTCGTGTCTTGTACAGACTAAAGCAACAAGGTGGAGTAAGGTCACAGTCAGTGACGAAATCAGTCACCATAATGATGAAGACAATAACAGCAATGTTGGTGATCATAAGAAAATGAAGGCATTTCTGGTGTCTCCGTCTTCAGAGAGTAACAATGATCCAGTTTTGAATTTCATGGAAAATCTTGAAATGGATGGCAGTTTCTTCTCGGAGCTACTCAAGATGGATTTTCCTGAATCATCTTGTCAAGGAAACAAGATACTGGAAGATAATGATAACCCTAGTTCGGTTGAGAAAGGGTATTTATCTCCAAAGTCATCCTGTGAAACCACTCACTTTTCTTGGGGTGATTCACTGTATGACCCGAATTTTGAATTTCTACCAGTGACAACTTTTACGGAGACCGGATTTGATTGGCTATGA 879 0.4118 MGRSPCCSKEGLNKGAWTALEDKILTEYINIHGEGKWRHLPKRAGLKRCGKSCRLRWLNYLRPGIKRGNITNDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNIGRKLQNGTPGYSITNGGARSTLNTVQHDQNVKNQEWQYDKGSCLVQTKATRWSKVTVSDEISHHNDEDNNSNVGDHKKMKAFLVSPSSESNNDPVLNFMENLEMDGSFFSELLKMDFPESSCQGNKILEDNDNPSSVEKGYLSPKSSCETTHFSWGDSLYDPNFEFLPVTTFTETGFDWL* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0317 292 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vra9g0317 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra9g0317 292 Gene3D - 70 150 - -
Vra9g0317 292 SMART sant 66 114 IPR001005 -
Vra9g0317 292 SMART sant 13 63 IPR001005 -
Vra9g0317 292 CDD SANT 16 61 IPR001005 -
Vra9g0317 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra9g0317 292 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 247 - -
Vra9g0317 292 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vra9g0317 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra9g0317 292 Gene3D - 14 66 - -
Vra9g0317 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra9g0317 292 CDD SANT 71 112 IPR001005 -
Vra9g0317 292 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 247 - -
Vra9g0317 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0317 Vra-Chr9 2555387 2556935 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0317 1 116 MYB Transcription Factor Family AT2G16720 75.862 8.01e-61 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0317 Myb_DNA-binding 2.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0317 K09422 - gmx:100809225 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra7g2610 7 46352015 46354304 Vra9g0317 9 2555387 2556935 ECH
Vra9g0317 9 2555387 2556935 Vra9g0317 9 2555387 2556935 ECH
Vra9g0317 9 2555387 2556935 Vra6g1484 6 29446045 29448470 ECH