Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0310 ATGCAGTCTGTAGTCAATCCAATGTTTTTCCAAGTTTCTCATAAAATCAAATATGTTGCATTCATTTGTCTCGTGTTTGTAACATCTTCTGTTACTTCCAATGACACTTCTCAGATAAAGTACGATGTATTTGTTAGCTTCAGAGGTGAAGATGTCCGTAGAGGTTTCCTTAGCCATTTGATCGAGGCATTTTCTCAGAAGCAAATTGCTTTCTTCGTAGATGATAGCATTCTAAAAGGGGAAGAACTATCTGAAGCACTCTTTGGAGCAATTGAAGAATCATACATTTCGTTGGTTATATTTTCAGAAAACTATGCTTCTTCAAGATGGTGTTTGTCAGAACTTGAAAAAATTATGGAGTGCAGGAGAAAAAATGGACAAACTGTAGTGCCTATTTTCTACAAAGTTGACCCCTCAGACATACGACATCAAAGGAGGACTTATGGAGATGCCTTTATCAAACATGAAAGAAACTATTCCTTGGCTACTGTGCAAACCTGGCGGTCAGCTTTGAGTGAATCTGCTAATCTATCAGGATTTGATTTATCGAAATTTCCAGATGAAGCTGAACTTGTTAAAAGGATTGTTAAATTTGTCTGGAGTACGTTGAATCATGTTCACCAAGTTAACTCCAAAGGGCTTGTTGGAATTGGTAAACGAATTGCACAAGTTGAATCATTGCTGCAATTAGAAACAAAAGATGTTCGCATGATTGGAATTTGGGGCATGGGTGGTATTGGTAAGACAACTATTGCTCAAGAAGTATATAATAAACTGTGTTTTAAATATGATAGTTGTTGTTTTCTGGCTAACATAAGGGAGGAGTCATGGAGACATGGAATAAACTCTTTGAAGGAAAAACTTTTCTCAACATTATTAAGAGAAGAACATTTGAAAATAGGCAGACCTGATGGGTTCCAGAAGTTAGTTGAGAGAAGATTTCATCGCATGAAGGTTCTTATTATTCTCGATGATGTCGGTGACGCAGAGCAACTAGAAAATTTAGCCAGAACAAATTGGTTTGGATGTGGTAGTAGAATCATTGTGACAACCAGAGATAAACAGGTGCTTGCTGAGGAGTCTGCCAGTGTATACCATGTTGAAGCCTTAAACTTTGATGAATCTTTGCGACTTTTCAATTTAAATGCCTTTAAGCAAAAACATACAGAGGCAGAGTACGAGGAGCTGTCAAAGAAAGCAGTTGAGTACGCAAAAGGCATTCCATTTGTTCTTAAAGTTCTGGGTCACCGTCTTCATGGGAAAGACAGAGAGATATGGGAAAGTGAATTAGAAAGACAAGAAGTGCACAACAAAAGGGTTCATGATATTATTAAATCGAGTTACTATGATCTTGAGGAGGATGAAAAGAGGATTTTTTTGGATATTGCATGTTTTTTTTATGGGCAGCAACTGCAGGTAAAGTACATAGATTTTTTATTGAAAGATCGTGATTATTCGGTGCCTGCGGGATTGGAAAGGTTGAAGGATAAAGCTTTTATCAGTATTTCTCAAGAAAATACTGTATCAATGCATGACATCATACAAGAAACTGCATGGCAGATTGCTGGCCAAGAATCCATTGAAAACCCCAGAAGAAGCCAGATTCGACTATTTGTTCCTGATGACATTTATGAAGTACTAACATACAACAAGGGTAACGAGGCTATCAGAAGCATAGTCGTCAACTTATTGAGAATCAAGCAACTACATTTGAAGCCACAAGTATTTACTAAGATGAGCAAGCTCCATTTTCTAAATATTTACACTGCAGGAACTCGCGATATTCGCTTCTACGAACCATGGGGCTTGTATCTTCATCAAGGGCTTCAATCTCTGCCGAATGAGCTAAGATATCTTGGGTGGATGCATTATCCTTTGGAATCTTTGCCTTCAAACTTTTCTGCAGAAAATCTCGTCGAGTTGCACTTGCCATATAGCCGGGTGAAAAAACTATGGCATGAAGTACCGGATCTTGTGAATTTAAAGGTCCTTATGCTGTATTCATCCTCAAACATAAAGGAGCTGCCGGACTTTTCAAGGGCCCCAAACCTTGAAGTAATAGATCTTCGATCCTGTGTAGGGTTGACTAGTGTTCATCCATCAGTTTTCTCTCTCAAAAAGCTTGAGAAATTAGATTTGGATGAATGCAGATCCCTTACAAGCCTTCGAAGCAATGTCCAAATGGAATCCCTTCGTTACCTCTCCCTCTTTAAATGCATGGAACTAAAAGATTTCTCGGTGACCTCAAAGAATATGATAATGTTGAATTTAGAAAACACAGATATCAAGCAACTCCCTTCTTCTTTTGGATCTCAAAGCAAGCTTGAAGACTTAAATCTAGCGTTCTCTTCCATTGAGAGCTTGCCTGCAGACATGAAAGATCTTAAAGGGTTGCAACATCTCGATCTACGACACTGTAGGAATCTTAGCTCCCTACCGGAGCTTCCTCCATCTATTGAAACACTAGATTGCCGAGAATGCGTGTCATTGGGGAGTGTAACGTTCCCTTCTATTGCTGAACAATGGAAAGAAAATAAGAAAAAGGTTGTCTTTTGGAACTGCTTGAACTTAGATGAACGTTCACTCAAGGCCATTGAGACGAATGCGCGAATTAACATGGTGAAATTTGCACACCGGCATTTGTCTACATCTGGTGATGCTCACGCCATTTATGTGTACCCAGGAAGCCAGGTTCCAGAATGGTTGACGCATAAGACCACACATGATGATGATGATGATGATGATGGTGATGATGATGAGGATAGCATAACTTTTGCTCCAAATCCCTCTCACCTGGGCTACATTTTTTGCTTGATTTTACCGGCAGTGCAGTATTCGGAAAGGGTTTTGAAATTGACGGTCAGTACTGAAGGTGAAGATGAAGGTGACAGTATGATTGTGTACTTAGACAGACCACATCATACTATTAAGTTTGATCACGTGTATCTGATGTACAACGAAGCATGTTCTCGCTTTCTAACCAGTCGTGCCAAACAGCAACCAATGCTAAAAATTAAGGTTACAGTAGCAACACTAACACTCTCATCAAAATACACGGAGGTGCAATTAAGAGGGTTTGGGGTGAGCACAATCAGCAATTTTCTTCAGAAACGACAATTGTATGATACTCCTATTCCAATGGAACATTCTGAAGGCTTTCCAGATGCTCTGTGGAATAGGTGA 3183 0.3927 MQSVVNPMFFQVSHKIKYVAFICLVFVTSSVTSNDTSQIKYDVFVSFRGEDVRRGFLSHLIEAFSQKQIAFFVDDSILKGEELSEALFGAIEESYISLVIFSENYASSRWCLSELEKIMECRRKNGQTVVPIFYKVDPSDIRHQRRTYGDAFIKHERNYSLATVQTWRSALSESANLSGFDLSKFPDEAELVKRIVKFVWSTLNHVHQVNSKGLVGIGKRIAQVESLLQLETKDVRMIGIWGMGGIGKTTIAQEVYNKLCFKYDSCCFLANIREESWRHGINSLKEKLFSTLLREEHLKIGRPDGFQKLVERRFHRMKVLIILDDVGDAEQLENLARTNWFGCGSRIIVTTRDKQVLAEESASVYHVEALNFDESLRLFNLNAFKQKHTEAEYEELSKKAVEYAKGIPFVLKVLGHRLHGKDREIWESELERQEVHNKRVHDIIKSSYYDLEEDEKRIFLDIACFFYGQQLQVKYIDFLLKDRDYSVPAGLERLKDKAFISISQENTVSMHDIIQETAWQIAGQESIENPRRSQIRLFVPDDIYEVLTYNKGNEAIRSIVVNLLRIKQLHLKPQVFTKMSKLHFLNIYTAGTRDIRFYEPWGLYLHQGLQSLPNELRYLGWMHYPLESLPSNFSAENLVELHLPYSRVKKLWHEVPDLVNLKVLMLYSSSNIKELPDFSRAPNLEVIDLRSCVGLTSVHPSVFSLKKLEKLDLDECRSLTSLRSNVQMESLRYLSLFKCMELKDFSVTSKNMIMLNLENTDIKQLPSSFGSQSKLEDLNLAFSSIESLPADMKDLKGLQHLDLRHCRNLSSLPELPPSIETLDCRECVSLGSVTFPSIAEQWKENKKKVVFWNCLNLDERSLKAIETNARINMVKFAHRHLSTSGDAHAIYVYPGSQVPEWLTHKTTHDDDDDDDGDDDEDSITFAPNPSHLGYIFCLILPAVQYSERVLKLTVSTEGEDEGDSMIVYLDRPHHTIKFDHVYLMYNEACSRFLTSRAKQQPMLKIKVTVATLTLSSKYTEVQLRGFGVSTISNFLQKRQLYDTPIPMEHSEGFPDALWNR* 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0310 1060 PRINTS Disease resistance protein signature 237 252 - -
Vra9g0310 1060 PRINTS Disease resistance protein signature 313 327 - -
Vra9g0310 1060 PRINTS Disease resistance protein signature 404 418 - -
Vra9g0310 1060 PRINTS Disease resistance protein signature 703 719 - -
Vra9g0310 1060 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 1033 IPR044974 GO:0006952
Vra9g0310 1060 Gene3D Ribonuclease Inhibitor 751 885 IPR032675 -
Vra9g0310 1060 Pfam TIR domain 40 215 IPR000157 GO:0007165
Vra9g0310 1060 SUPERFAMILY L domain-like 561 856 - -
Vra9g0310 1060 SUPERFAMILY Toll/Interleukin receptor TIR domain 32 180 IPR035897 -
Vra9g0310 1060 Gene3D - 207 368 IPR027417 -
Vra9g0310 1060 Gene3D - 369 452 IPR042197 -
Vra9g0310 1060 MobiDBLite consensus disorder prediction 902 925 - -
Vra9g0310 1060 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 29 1033 - -
Vra9g0310 1060 SMART till_3 40 177 IPR000157 GO:0007165
Vra9g0310 1060 Pfam NB-ARC domain 231 440 IPR002182 GO:0043531
Vra9g0310 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 462 IPR027417 -
Vra9g0310 1060 Gene3D - 35 206 IPR035897 -
Vra9g0310 1060 Gene3D Ribonuclease Inhibitor 546 750 IPR032675 -
Vra9g0310 1060 SUPERFAMILY "Winged helix" DNA-binding domain 439 547 IPR036390 -
Vra9g0310 1060 ProSiteProfiles TIR domain profile. 39 203 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0310 Vra-Chr9 2466728 2470658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0310 36 814 WRKY Transcription Factor Family AT4G12020 32.996 5.77e-103 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0310 - - pvu:PHAVU_010G131900g 1553.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0310 9 2466728 2470658 Vra9g0310 9 2466728 2470658 ECH