Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0309 ATGACATATTCTAATTCTTTCCGAGTTTTTGATAGAATCAAACGTGTAATATTTGTGTGTGTCTTGCTGGCCGCGATAGACAATAATAATAGTAATAATTCTTCATATCCAGTGACAGATTTTGCTTATGATAATGACTCCCCTCAGATAAAGTTCGATGTGTTTGTTAGCTTTAGAGGCACAGATATCCGGCAAGATTTCCTTAGCCATTTGATTGAGGCGTTTTCTCAAAGGCATATTAATGCGTTTGTGGATAACAAGGTTGTCAGAGGAGATGGAATGTCTGAAGCACTCATTCGTGCAATTGAAGGATCATCAATTTCATTGATTATATTTTCACAAGACTATGCTTCTTCACACTGGTGTTTGTCAGAGCTTGTGAAAATTGTTGAGTGTAGAAAAAAAAATGGCCAGATTGTACTACCTGTCTTCTACAAAGTGGATCCTGCACATGTAAGACATCAGAAAGGGACTTACGAACATGCCTTCGCTAAACATCAGATAAGATATAGTTTGACCACTATGCAAATCTGGAGAACTGCTTTGACTGAAGCTGCTAATCTGGCAGGATTTCATTCATCAACTTTTCGGGACGAAGCTGAGTTTATTAAAGAGATAGTTAAGTGCGTGTTGAGTAGGTTGAATCAAGTGCAACAAGGTAAAGCCAAAGGGCTTGTTGGAGTTGGTAAACGAATTGCACATGTTGAATCACTGCTACAATCAGAAGAGCCTGATGTACGTATTATGGGAATATGGGGCATGGGTGGCATTGGTAAAACAACCATTGCACAAGAAGTATATGACAAGTTGTGTTTTGAATATGAAGGTTGCTGTTTTTTGGCTAACATAAGAGAAGAATCGGGAAGACTTGGAATGATCTCTTTAAAGAAGAAGCTTTTCTCAACATTATTAGGAGGAGAGGATTTGAAAATTGACACACCTAACGGATTGCCTCAATATATTGAGAGAAGGCTTCGACGTATGAAAGTTCTCATCATTCTTGATGATGTCAATGATTCAGATCAACTTGAAGTTTTAGCAGGAACACATGATTGGTTTGGATCAGGTAGCAGAATCATCATAACAACCAGAGATAAACAGGTACTTGCTAGAGAGTTTGCTAGTATATATGAGGTAGAGGCATTAAACTTTGATGAATCCTTAAGGCTTTTCAATTTGAATGCCTTTAAGCAAAATCATCTTGAAAGTGAGTACCATGAGCTTTCAAAGAAAGTGGTCAACTATGCAAAAGGGATTCCACTAGTTCTTAAAGTTTTGGGTCACCTTCTTCATGGAAAAGATAAGGAAACTTGGGAAAGCCAATTGGAAAGACTCAAAAAAGTACAGAACAAAAAGGTCCATGATATTATTAAATTGAGTTACAATGATCTTGATCGGGATGAAAAGAAGATATTTTTAGATATTGCATGCTTTTTCGATGGACTGAATCTGAAGGTAAAGCATATGAATTTTTTATTGAAAGACCATGATTATTCAGTGGTTGCCGGATTAGAAAGGTTGAAAGATAAAGCTCTTATAAGTGTTTCTCAAGAAAATGGTGTATCGATGCACAACATTATACAAGAAACAGCTTGGCAGATTGCTCGAGAAGAATCAATTGACAATCCTAGAAGCCAGATTCGACTATTGGATCCTGAGGACATTTATCATGTACTAAACTATAATAAGGGTGACGAGGCCATCAGAAGCATAGTCATAAACTTGTCAAGAATCAAACAACTGCAATTAAACCCTCAAGTATTTGCAAGGATGAGCAAATTACACTTTCTAGATTTTTATAGTAAAGGGTCTTGTAGTTGCCTCAGGGATCAAGGAGGCTTGTATCTTCCACAAGGGCTTGAATCTTTATCAAATGAACTAAGATATCTTCGTTGGACCCATTATCCTTTGGAATCTTTGCCTTCAAAGTTTTCTGCTGAAAATCTTGTTGAATTGAACTTACCAAATAGCCGACTGAAAAAACTTTGGCAAGAAGCACCGGAGGATCTTGTTAACTTAAGGGTCCTTATACTTCATTCATCAACAAGACTAAAGGAGCTACCAAACTTTTCAAAGGCCACAAATCTCAAAGTGATAGATCTCAGATTTTGTGTACGTCTGACTAGTGTGCATTCATCAATTTTTTCTCTTAGAAATCTTGAGAAATTGTACCTAGGTGGCTGCCTTTCCCTTAGAAGCCTTCGGAGCAATGTCCATTTGGATTCTCTTCGTTATCTCTCCCTCTATGGATGCATGTCACTGAAGGATTTCTCAGTGACCTCAAAGAATATGGTAAAGTTGAATTTAGAACTCACCGGAATCAAGCGACTACCTTCATCATTTGGACTTCAAAGCAACCTCCAAAAGCTACGGTTGGCATACACTTACATTGACCACTTGCCAACAAGTATCAAGCATCTTACAAGGCTGCGACATCTTGATCTAAGATATTGCAGACAGCTTCGAACTCTACCAGAGCTTCCGGCATCACTTGAAACACTAGATGCCCGTGGATGTATATCACTTGAGACTGTAACGTTCCCTTCTACTGCTGGTGAACAACTGAAGGAAAATAAGAAAAGAGTTGCTTTCTGGAACTGCTTGAAATTGGATGAACCTTCTCTCACTGCTATTGAGTTGAATGCACAAATTAACATGATGAAATTTGCACACCAACATTTTTCCCTATTTGGGGATGCTCAAAGCACCTATGTGTATCCTGGAAGTAAAGTTCCAGAATGGCTGGTGCATAAGACGACACATGATGATTTCGTGATTATTGATCTCTCTTCTGTTCTTTCTCCACACTCCTCACACATAGGCTTCATTTTTGGCTTTGTTGTTCCAGAAGTCCCATTTGGGGGTTCAGCTTTGGAATTTAAGATTAGTATTAGTGGTGAAGGTAGCCATATCAATGTGTACATGGACAGACCACGACATCGTATTACATCGGATCATGTGTATCTAATGTATGACCAGGCTTGTTCTCGCTACCTAAACGGTCGTGCCAAACATGAGCCAAGGTTGAAAATTAAGGTTGCATTGGCATCTCGAACGCTCACATCCAAGTACGTACCATTAAAGCTAAGAGCTTTTGGAATCAGTGCAATAAATACTACAGACTTTCTCAGTTTTGTTCAAAAAGTAAAATTTGGTGATAATGTACCAAATGTCCCAATTTTGTCAAGATTTTTCTGTACTTTCTGCATTGTTGTCTTTGTCGGGACTTTTAATATTTGTATCAGAAGATTGGTGTAG 3258 0.3821 MTYSNSFRVFDRIKRVIFVCVLLAAIDNNNSNNSSYPVTDFAYDNDSPQIKFDVFVSFRGTDIRQDFLSHLIEAFSQRHINAFVDNKVVRGDGMSEALIRAIEGSSISLIIFSQDYASSHWCLSELVKIVECRKKNGQIVLPVFYKVDPAHVRHQKGTYEHAFAKHQIRYSLTTMQIWRTALTEAANLAGFHSSTFRDEAEFIKEIVKCVLSRLNQVQQGKAKGLVGVGKRIAHVESLLQSEEPDVRIMGIWGMGGIGKTTIAQEVYDKLCFEYEGCCFLANIREESGRLGMISLKKKLFSTLLGGEDLKIDTPNGLPQYIERRLRRMKVLIILDDVNDSDQLEVLAGTHDWFGSGSRIIITTRDKQVLAREFASIYEVEALNFDESLRLFNLNAFKQNHLESEYHELSKKVVNYAKGIPLVLKVLGHLLHGKDKETWESQLERLKKVQNKKVHDIIKLSYNDLDRDEKKIFLDIACFFDGLNLKVKHMNFLLKDHDYSVVAGLERLKDKALISVSQENGVSMHNIIQETAWQIAREESIDNPRSQIRLLDPEDIYHVLNYNKGDEAIRSIVINLSRIKQLQLNPQVFARMSKLHFLDFYSKGSCSCLRDQGGLYLPQGLESLSNELRYLRWTHYPLESLPSKFSAENLVELNLPNSRLKKLWQEAPEDLVNLRVLILHSSTRLKELPNFSKATNLKVIDLRFCVRLTSVHSSIFSLRNLEKLYLGGCLSLRSLRSNVHLDSLRYLSLYGCMSLKDFSVTSKNMVKLNLELTGIKRLPSSFGLQSNLQKLRLAYTYIDHLPTSIKHLTRLRHLDLRYCRQLRTLPELPASLETLDARGCISLETVTFPSTAGEQLKENKKRVAFWNCLKLDEPSLTAIELNAQINMMKFAHQHFSLFGDAQSTYVYPGSKVPEWLVHKTTHDDFVIIDLSSVLSPHSSHIGFIFGFVVPEVPFGGSALEFKISISGEGSHINVYMDRPRHRITSDHVYLMYDQACSRYLNGRAKHEPRLKIKVALASRTLTSKYVPLKLRAFGISAINTTDFLSFVQKVKFGDNVPNVPILSRFFCTFCIVVFVGTFNICIRRLV* 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0309 1085 Gene3D - 217 376 IPR027417 -
Vra9g0309 1085 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 38 1077 IPR044974 GO:0006952
Vra9g0309 1085 SUPERFAMILY L domain-like 571 843 - -
Vra9g0309 1085 Gene3D - 381 465 IPR042197 -
Vra9g0309 1085 Pfam TIR domain 51 220 IPR000157 GO:0007165
Vra9g0309 1085 Gene3D - 49 216 IPR035897 -
Vra9g0309 1085 SUPERFAMILY "Winged helix" DNA-binding domain 451 559 IPR036390 -
Vra9g0309 1085 PRINTS Disease resistance protein signature 248 263 - -
Vra9g0309 1085 PRINTS Disease resistance protein signature 324 338 - -
Vra9g0309 1085 PRINTS Disease resistance protein signature 416 430 - -
Vra9g0309 1085 PRINTS Disease resistance protein signature 805 821 - -
Vra9g0309 1085 ProSiteProfiles TIR domain profile. 50 214 IPR000157 GO:0007165
Vra9g0309 1085 Pfam Leucine Rich Repeat 648 665 IPR011713 -
Vra9g0309 1085 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 223 475 IPR027417 -
Vra9g0309 1085 SMART till_3 51 188 IPR000157 GO:0007165
Vra9g0309 1085 Pfam NB-ARC domain 236 463 IPR002182 GO:0043531
Vra9g0309 1085 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 38 1077 - -
Vra9g0309 1085 SUPERFAMILY Toll/Interleukin receptor TIR domain 45 191 IPR035897 -
Vra9g0309 1085 Gene3D Ribonuclease Inhibitor 739 881 IPR032675 -
Vra9g0309 1085 Gene3D Ribonuclease Inhibitor 566 738 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0309 Vra-Chr9 2461389 2466224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0309 52 851 WRKY Transcription Factor Family AT4G12020 33.251 7.86e-110 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0309 - - gmx:100802823 1716.82