Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0308 ATGGATCTGTGTCCTTGGTGTCTGATAATTGGAACACTGGCAATTTCTTTCACGTTCTTCACTTTCATCATGCTTGGATGGTGCTTGGATACCAATCACATACTATCCCTTCCTACAACAGGCTTATCTTTTGATGACAAGTTCTCTCCTTGCATGAGTTTGGAGTCTCATTCGATTACCTTCAACTACCAGGCTGCAGAAGGCACAAACCAGACTGAATGTGTTATCTGTTTGACAAGTTTTGAAGAAGAGGAAAGTGTACGGAAGCTTCACACTTGCAAGCACATCTTCCACACCCTTTGCATTGACAAGTGGCTTGGCTCTCATTCAGGTTGTCCACTGTGCCGCACTCAGATTGATAAAGCGAGTTCCCAAAATAGTAGAGTGTCTTTGGAAGAAAATGATCACATGATCATGGTCATTGTCAACTCCTGA 435 0.4299 MDLCPWCLIIGTLAISFTFFTFIMLGWCLDTNHILSLPTTGLSFDDKFSPCMSLESHSITFNYQAAEGTNQTECVICLTSFEEEESVRKLHTCKHIFHTLCIDKWLGSHSGCPLCRTQIDKASSQNSRVSLEENDHMIMVIVNS* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0308 144 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 45 137 IPR044675 -
Vra9g0308 144 Pfam Ring finger domain 73 116 IPR001841 -
Vra9g0308 144 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Vra9g0308 144 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 45 137 - -
Vra9g0308 144 SUPERFAMILY RING/U-box 64 122 - -
Vra9g0308 144 SMART ring_2 74 115 IPR001841 -
Vra9g0308 144 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 126 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0308 Vra-Chr9 2458100 2458534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0308 57 119 C3H Transcription Factor Family AT1G72220 52.308 3.75e-16 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0308 - - gmx:102661636 262.307