Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0304 ATGTTGACTTGCATAGCTTGTACCAAACAACTCAATAATGGATCTCTCCGCCAAGAAGAAGAGGAGGAAGCTGTTCACACACCCGGCACAAAGCAAGCCATCAAGGCTCTCACTGCACAGATCAAGGACATGGCAGTGAAGGCTTCCGGGGCCTATAAGAGCTGCAGACCTTGTTCGGGATCTTCCAATGGTAACAGAAATAGGAAGTATGCAGACTCAGATATGGGGTCAGAGTCAGCCAGGTTCAACTGGGCCTACCGCAGAACTGGGAGCTCCAATTCAACCCCAAGGATGTGGGGGAAGGAAACAGAAGGTGGGAGGGTGAAAGGGCTTTCCAGTGGGGAAGGAACTCCAGCTTCAGTGAGTGGACGCACTGAGTCAGTGGTGTTCATGGAGGAGGATGAGCCTAAGGAGTGGATTGCACAAGTGGAGCCTGGTGTGCTTATTACTTTTGTTTCATTGCCTCAGGGAGGGAATGATCTCAAAAGGATACGGTTCAGTCGTGAAATGTTTAATAAATGGCAAGCTCAGAGGTGGTGGGCAGAGAATTATGACAAGGTCATGGAGTTGTACAATGTTCAGAGGTTCAATCAGCAAGCAGTTCCTCTTCCAACCCCACCTAGATCTGAAGATGAGAGCTCAAAGATTGAATCTGCTAGGGACAGTCCTGTCACTCCTCCACTCAGCAAAGAGCGTGCACCCCGCCATTTTCACCACCCAATGGGAATGGGCTACTCCTCATCAGATTCACTGGATCATCACCAAATGCATCCTCACCCTTGTTATGAAACAAGTGGTCTGGCATCAACACCTAATCTTTCCAACATTAGTGCACCAAAGACTGAAAAATCATCCGTTGATGGTTCTGTAAGGACCAGTTCATCTGGTGAAGATCACTCAGGCGAGTTTTCAATCAGCAATGCCAGTGATATGGAAACTGAATGGGTTGAACAGGATGAACCAGGAGTCTACATCACTATCAGAGCACTGCCTGGTGGAACTAGAGAACTCAGGCGTGTTCGGTTCAGCCGAGAAAGGTTTGGAGAAATGCATGCAAGATTGTGGTGGGAAGAGAACCGTGCTAGGATACAAGAACAATACTTGTGA 1107 0.4824 MLTCIACTKQLNNGSLRQEEEEEAVHTPGTKQAIKALTAQIKDMAVKASGAYKSCRPCSGSSNGNRNRKYADSDMGSESARFNWAYRRTGSSNSTPRMWGKETEGGRVKGLSSGEGTPASVSGRTESVVFMEEDEPKEWIAQVEPGVLITFVSLPQGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNQQAVPLPTPPRSEDESSKIESARDSPVTPPLSKERAPRHFHHPMGMGYSSSDSLDHHQMHPHPCYETSGLASTPNLSNISAPKTEKSSVDGSVRTSSSGEDHSGEFSISNASDMETEWVEQDEPGVYITIRALPGGTRELRRVRFSRERFGEMHARLWWEENRARIQEQYL* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0304 368 ProSiteProfiles BRX domain profile. 137 192 IPR013591 -
Vra9g0304 368 MobiDBLite consensus disorder prediction 90 123 - -
Vra9g0304 368 MobiDBLite consensus disorder prediction 265 312 - -
Vra9g0304 368 ProSiteProfiles BRX domain profile. 313 368 IPR013591 -
Vra9g0304 368 MobiDBLite consensus disorder prediction 55 74 - -
Vra9g0304 368 PANTHER PROTEIN BREVIS RADIX-LIKE 3 1 368 - -
Vra9g0304 368 MobiDBLite consensus disorder prediction 55 70 - -
Vra9g0304 368 Pfam Transcription factor BRX N-terminal domain 22 58 IPR027988 -
Vra9g0304 368 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 368 IPR044532 -
Vra9g0304 368 MobiDBLite consensus disorder prediction 200 312 - -
Vra9g0304 368 Pfam Transcription factor regulating root and shoot growth via Pin3 312 367 IPR013591 -
Vra9g0304 368 Pfam Transcription factor regulating root and shoot growth via Pin3 137 191 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0304 Vra-Chr9 2405451 2409133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0304 1 368 Major Intrinsic Protein MIP AT1G31880 49.608 2.08e-105 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0304 - - gmx:100805480 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0304 9 2405451 2409133 Vra9g0304 9 2405451 2409133 ECH