Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0301 ATGAAGAACTTAAATGAGAAAGCCTCTGGTTCTACCCATTTAACAGCTCCTTATGCTCTTGGATGCTCGTCATGGGGGGCTTCCTCTGAATCTGATGTTCAACAATCATCCATGTCCAGAGGTTTGACCTTGAAAATGGGTGTTCTGCCGCAGCAATGCCATAAGACTAAGCCATTGAATTTTCAATATCAAGATCGAGATTCTTCTTCATCTCAATCAACTGGTCAGTCTTATCCGGAAGTTGGTTCAGCGCAATCAGGTCAATTTTCAGTCCAGTGTAGCAATTCTTCTGCTTGTTCGACACTTAACACAACTGGGAGAAAGAGTATAGAAGGTGTAATCAGGTCATCTGTTCGGGGTCAGGATTTTACCTTCCCTCCTTCACAAATGTGTCAAAACCAGCCACATGCTCATACTGCATTCCATCTTGCTGAGCCATGCTTTAGTGGCCTACTAGCTTCTCCATATGGCCCACAACCTAATATTCATCCTGCTCAACTGATAGGAATGGCTACTGCTAGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCTATATTTGTGAATGCAAAACAATACCATGCTATTCTGAGGCGCAGACAATACCGGGCAAAACTTGATGCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCATTGAAGAGAGCTAGAGGTTCTGGTGGTCGCTTCTTGAATACAAAAAAGCACGAAGAGTCTAAACCAACTTCACATAACCATGACATAGATGTTTCAAGGTGTACTAATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGTCTAATGGAGAAGTTGAACTACAGAGATGGTGCCTCCACAGCCACCTGTTCAGATATTTCTAGTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAACCTGACATTAGATTATGTGTTTACCCTTCTCATATTGGAAGGAACATGCAGGGTTACTCTCCTGATATCAATGGTGGTGGTGGTGGTGGTGGTGCAAACCAGCATCGTCTATCAGTCCTTATGTGA 1056 0.4337 MKNLNEKASGSTHLTAPYALGCSSWGASSESDVQQSSMSRGLTLKMGVLPQQCHKTKPLNFQYQDRDSSSSQSTGQSYPEVGSAQSGQFSVQCSNSSACSTLNTTGRKSIEGVIRSSVRGQDFTFPPSQMCQNQPHAHTAFHLAEPCFSGLLASPYGPQPNIHPAQLIGMATARIPLPLDLSEEPIFVNAKQYHAILRRRQYRAKLDAQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEESKPTSHNHDIDVSRCTNLNLRGNMSESKARLMEKLNYRDGASTATCSDISSASNSGDLFQQHQPDIRLCVYPSHIGRNMQGYSPDINGGGGGGGANQHRLSVLM* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0301 351 MobiDBLite consensus disorder prediction 62 83 - -
Vra9g0301 351 SMART cbf3 181 242 IPR001289 GO:0003700|GO:0006355
Vra9g0301 351 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 20 314 IPR001289 GO:0003700|GO:0006355
Vra9g0301 351 MobiDBLite consensus disorder prediction 239 256 - -
Vra9g0301 351 MobiDBLite consensus disorder prediction 238 257 - -
Vra9g0301 351 Gene3D - 182 243 - -
Vra9g0301 351 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 20 314 - -
Vra9g0301 351 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 184 239 IPR001289 GO:0003700|GO:0006355
Vra9g0301 351 PRINTS CCAAT-binding transcription factor subunit B signature 185 207 IPR001289 GO:0003700|GO:0006355
Vra9g0301 351 PRINTS CCAAT-binding transcription factor subunit B signature 216 239 IPR001289 GO:0003700|GO:0006355
Vra9g0301 351 ProSiteProfiles NF-YA/HAP2 family profile. 182 242 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0301 Vra-Chr9 2357076 2361756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0301 8 349 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.954 1.47e-57 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra9g0301 CBFB_NFYA 3.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0301 K08064 - gmx:100500765 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0301 9 2357076 2361756 Vra9g0301 9 2357076 2361756 ECH
Vra5g2565 5 32409563 32412928 Vra9g0301 9 2357076 2361756 PCT