Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0300 ATGGACTCGCGCACGTATAATCCACGCACGGTCGAAGAGGTTTTTAGGGATTTCAAGGGCCGAAGAGCTGCTCTCATCAAAGCCCTTACCACCGATGTTGAAGATTTCTACAACCAATGTGATCCGGAGAAGGAGAATCTGTGCTTGTATGGCTTTCCCAGTGAACAGTGGGAAGTAAATTTACCTGCTGAAGAGGTACCACCTGAGCTTCCTGAGCCTGTGCTGGGCATCAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGCTATCTTTAGTTGCTGTCCATAGTGATGCATGGTTACTTGCTATTGCATTCTATTTTGGAGCCAGATTCGGGTTTGATAAAGCTGACAGGAAACGACTTTTCAACATGATCAACGAATTGCCAACAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAGCAAGTTAAGGAGAAGTCTTCTGTTTCAAACCACAGTGGCAGCAAGTCTAAGTCCAGCTCTAAGCAACGAGCTCCAGAATCTCAGAGTAGACAGTCAAAGCCATCGCAACCAAAAGAAGAGGATGAAGAACTGGATGAACAAGATGATGATGAACATGGAGAGACCTTGTGTGGGGCATGTGGTGAGCATTATGGCACTGATGAATTCTGGATTTGCTGTGACATCTGTGAGAAATGGTTCCATGGTAAATGTGTGAAGATTACACCAGCTAGGGCAGAGCATATCAAACAATACAAGTGTCCCTCATGCAGTAACAAGAGAGCTCGCCCCTGA 759 0.4532 MDSRTYNPRTVEEVFRDFKGRRAALIKALTTDVEDFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDAWLLAIAFYFGARFGFDKADRKRLFNMINELPTIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKQRAPESQSRQSKPSQPKEEDEELDEQDDDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRARP* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0300 252 MobiDBLite consensus disorder prediction 149 174 - -
Vra9g0300 252 CDD PHD_AL_plant 198 248 IPR044104 -
Vra9g0300 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Vra9g0300 252 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 5 252 - -
Vra9g0300 252 Pfam PHD-finger 199 248 IPR019787 -
Vra9g0300 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Vra9g0300 252 SMART PHD_3 198 246 IPR001965 -
Vra9g0300 252 MobiDBLite consensus disorder prediction 144 192 - -
Vra9g0300 252 Pfam Alfin 10 138 IPR021998 GO:0006355|GO:0042393
Vra9g0300 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Vra9g0300 252 PANTHER CPG BINDING PROTEIN 5 252 IPR045104 GO:0006355|GO:0042393
Vra9g0300 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0300 Vra-Chr9 2348115 2352890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0300 6 251 Alfin-like Transcription Factor Family AT3G42790 78.049 1.77e-128 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vra9g0300 Alfin 8.3e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0300 - - gmx:100170700 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0300 9 2348115 2352890 Vra5g2564 5 32404230 32408517 ECH
Vra9g0300 9 2348115 2352890 Vra9g0300 9 2348115 2352890 ECH
Vra5g2564 5 32404230 32408517 Vra9g0300 9 2348115 2352890 PCT