Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0293 ATGTTTTCCAATACTCCAACACCTGTTGTAATCAGAAGAGACAGCACCGTGATCGCAGTAAGCGGAGGTCGACATAGCAATGGTGCTGTCAAATGGGCTGTGGAACACCTCCTAAAGAAGAACTCCTCATGCATCCTTCTTCATGTTCGAACTAGGACCATGCTTAACCCTGATAATAATAATAATAATAATAATAATACTAATGATCCACCCAAAGGAGCTCGTCCACCAACTGAAGAAGAGTTGCACCAATTCTTTCTTCCCTTTAGAGGATTTTGTGCCAGAAAAGGGATATCAACAAAGGAATTGGTCTTGCACGACCTTGATGTTACAAGTGCACTCATTGCTTTCGTTGATGACAATTGTATCAGCACCCTAGTTGTTGGTGCTGCTACTTCTTCCTGGGGTTCTATTCTAAGGAGATTTAATAAAGATGATGTGTCAGCCAGTTTAGCAAAATCCTTACCAGATACATGCAGTTTATATGTTATATCAAAAGGAAAAGTACAACATATTCGACCTTCAGGTCCTATAAAAGATATAGTCAACTTTTTAGAAAGTGATCCATTGGAGCAGCCACACAGAGATCTCAACATTAACCAAATAGCTTTTGAAGATATAGAGAGGAAACTAATCAAAGATGCAGTAAAACAACAATCTAATAATAAACTTTGGGACTATTTACGTGAAGAAACAAATTCACCAAAAGGTCCAATCGAGTACCCTCCATCACAAAATTCTTCTGCAAATAATACTCCTGGAAATAGTGACAGCACGGGGCAATCACTTGGTCCTTCTTTGACAAATAGGTTAAATGAAAACCCAAAAATTGTTCTAAACGCACACCATTCTAGGACCAATTCACACCATTCTATTAGGAACGTTTCACACCATTCTAGGACAAATTCACACCATTATGGGAACAATTCTTCTATAAAAGATCAAGTAAACTTTGATATACAGATGAGGAAATTGAAATTAGAACTACAAAAAACTGCAGAGATGTATGGTATGGCTTGCAAAGAAGCTGTTTTAGCTACACAAAAGGCAATGGAGATTGAAAAGTATAGACAAGAGAAAGAACGCGATATGGAGGAAGCAAAGCTTGCTCAATCCAAAATGACTATGGAGACAACAGAAATGTCAAAACACCTGGTAAAAATGGATTCTCAGAAGAGAAAGGAAGTTGAATTGAAAGCCAAAAATGAGGAAGAAGAGACGATTAAAGCATTGCAGGAAGCTCTATATAACAATGTTCCCTACAGAAGATATACAATTGAAGATATTGATGCTGCAACAAATAAATTCGATAATGCTTTAAAAATTGGCGAAGGTGGATATGGTCCTGTCTTTAAAGGACTTCTTGATCACACCACTGTTGCTATTAAAGCCGTGAGACCAGATTTAGCCTATGCAGAAAAACAATTTCAACAGGAGGTCATGGTTTTAAGCACCATAAGACATCCAAACATGGTGCTTCTCTTAGGAGCATGTCCAGAATTTGGTTGTCTTGTGTACGAGTATATGGTAAATGGAAGCTTAGAAGATCGTCTGCTTAAAAGAGATAACAGTCCTCCAATCCCATGGAAAACGCGTTTCAAAATAGCAGCTGAGATTGCCACAGGCCTTCTTTTTCTTCATCAGACAAAGCCAGAACCCCTGGTGCATCGTGACTTGAAACCAGCAAACATTCTTTTAGACAAGAACTATGTGAGCAAGATCAGTGATGTTGGTTTGGCACGACTAGTTCCTCCTTCAGTGGCTGATCAAACCACACAATATCGTTTAACTGGTGCAGCTGGAACATTTTGTTATATCGATCCTGAGTATCAACAAACAGGATTGTTGGGTGTGAAATCAGACGTATATTCATTAGGAGTGGTGTTGCTACAAATCATTACAGGAAAATCTCCAATGGGGTTGTCACACTTGGTTGAGAAGGCTCTTCTGTCAAATACTTTGAGTGAGGTGCTTGATCCAAGTGTTACAGACTGGCCAATAGAAGCGACTTCATCATTCGCTAAGTTGGCCTTAAAGTGCTGCGAGTTGAGAAAACGTGATAGACCAGACCTTGGTACTGTTGTCTTGCCGGAGTTAAATAGAATATCGAGGTTGTGGGACGATGAACACATATATCCCCTCAGAAATTATCACATGGCTTGA 2163 0.392 MFSNTPTPVVIRRDSTVIAVSGGRHSNGAVKWAVEHLLKKNSSCILLHVRTRTMLNPDNNNNNNNNTNDPPKGARPPTEEELHQFFLPFRGFCARKGISTKELVLHDLDVTSALIAFVDDNCISTLVVGAATSSWGSILRRFNKDDVSASLAKSLPDTCSLYVISKGKVQHIRPSGPIKDIVNFLESDPLEQPHRDLNINQIAFEDIERKLIKDAVKQQSNNKLWDYLREETNSPKGPIEYPPSQNSSANNTPGNSDSTGQSLGPSLTNRLNENPKIVLNAHHSRTNSHHSIRNVSHHSRTNSHHYGNNSSIKDQVNFDIQMRKLKLELQKTAEMYGMACKEAVLATQKAMEIEKYRQEKERDMEEAKLAQSKMTMETTEMSKHLVKMDSQKRKEVELKAKNEEEETIKALQEALYNNVPYRRYTIEDIDAATNKFDNALKIGEGGYGPVFKGLLDHTTVAIKAVRPDLAYAEKQFQQEVMVLSTIRHPNMVLLLGACPEFGCLVYEYMVNGSLEDRLLKRDNSPPIPWKTRFKIAAEIATGLLFLHQTKPEPLVHRDLKPANILLDKNYVSKISDVGLARLVPPSVADQTTQYRLTGAAGTFCYIDPEYQQTGLLGVKSDVYSLGVVLLQIITGKSPMGLSHLVEKALLSNTLSEVLDPSVTDWPIEATSSFAKLALKCCELRKRDRPDLGTVVLPELNRISRLWDDEHIYPLRNYHMA* 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0293 720 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 15 705 - -
Vra9g0293 720 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 17 156 - -
Vra9g0293 720 Pfam Protein tyrosine and serine/threonine kinase 441 694 IPR001245 GO:0004672|GO:0006468
Vra9g0293 720 Coils Coil 386 414 - -
Vra9g0293 720 MobiDBLite consensus disorder prediction 286 300 - -
Vra9g0293 720 SMART serkin_6 436 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0293 720 MobiDBLite consensus disorder prediction 285 310 - -
Vra9g0293 720 ProSitePatterns Serine/Threonine protein kinases active-site signature. 554 566 IPR008271 GO:0004672|GO:0006468
Vra9g0293 720 Gene3D HUPs 14 165 IPR014729 -
Vra9g0293 720 MobiDBLite consensus disorder prediction 55 72 - -
Vra9g0293 720 CDD STK_N 15 167 - -
Vra9g0293 720 ProSiteProfiles Protein kinase domain profile. 436 699 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0293 720 SUPERFAMILY Protein kinase-like (PK-like) 415 695 IPR011009 -
Vra9g0293 720 PANTHER OS02G0152300 PROTEIN 15 705 - -
Vra9g0293 720 MobiDBLite consensus disorder prediction 238 270 - -
Vra9g0293 720 MobiDBLite consensus disorder prediction 55 78 - -
Vra9g0293 720 MobiDBLite consensus disorder prediction 234 270 - -
Vra9g0293 720 Gene3D Transferase(Phosphotransferase) domain 1 509 710 - -
Vra9g0293 720 Coils Coil 350 373 - -
Vra9g0293 720 Gene3D Phosphorylase Kinase; domain 1 415 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0293 Vra-Chr9 2261245 2264519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0293 15 708 Receptor kinase-like Gene Family AT1G78940 42.647 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra9g0293 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0293 - - var:108320196 1346.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0293 9 2261245 2264519 Vra9g0293 9 2261245 2264519 ECH
Vra9g0293 9 2261245 2264519 Vra5g2561 5 32389683 32392770 PCT