Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0280 ATGGGGAATCAGAAGCAGAAGTGGACGCAAGACGAGGAAGATGCACTCATCGCCGGGGTTGAAAAGCACGGTCCCGGAAAGTGGAAAAACATTCTCAAAGATCCCCAATTTGCCCCTTTTCTTACTTCCCGTTCCAACATCGACCTTAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCGAAAGACAAGCCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCTTCTTCTACCAACTCCTCCACCACCACCACCACACCTCAAAACGCGGCTTCTGCTCCACAAAACGTTCCGTCTGATGTCACTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGCGAAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAGAATTGTTACAAAATAAAAAAGGATGTCTCCTCGGACACAAAAGCACCTTCACCAAAACCAAAGGATGTCCGGCCAACACCATCACAACCTGCACCACAACCACAATGGCAGTCCTCGGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAGGATGCTGCAGATACTGCAGCCTACAGAATTGCGGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAACATAGCGATTCAATGTTGGAGCTAGCAAAAGACATATATGAACAATGTTCTCGTGGTGAAATTATCCTTTTGGCTTAA 870 0.4471 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPSSTNSSTTTTTPQNAASAPQNVPSDVTVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSDTKAPSPKPKDVRPTPSQPAPQPQWQSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLELAKDIYEQCSRGEIILLA* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0280 289 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 288 - -
Vra9g0280 289 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 121 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra9g0280 289 MobiDBLite consensus disorder prediction 53 122 - -
Vra9g0280 289 SMART h15plus2 119 180 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra9g0280 289 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vra9g0280 289 Gene3D - 2 58 - -
Vra9g0280 289 Gene3D - 118 200 IPR036388 -
Vra9g0280 289 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vra9g0280 289 PANTHER SINGLE MYB HISTONE 4 1 288 IPR044597 GO:0003691
Vra9g0280 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Vra9g0280 289 MobiDBLite consensus disorder prediction 185 217 - -
Vra9g0280 289 SUPERFAMILY "Winged helix" DNA-binding domain 121 197 IPR036390 -
Vra9g0280 289 SMART sant 4 59 IPR001005 -
Vra9g0280 289 MobiDBLite consensus disorder prediction 80 120 - -
Vra9g0280 289 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vra9g0280 289 CDD SANT_TRF 6 56 - -
Vra9g0280 289 Pfam linker histone H1 and H5 family 123 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0280 Vra-Chr9 2079707 2082957 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0280 1 289 Single Myb Histone (SMH) Gene Family AT1G72740 46.758 4.08e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra9g0280 Linker_histone 1.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0280 K09422 - gmx:778177 416.387