Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra9g0280 | ATGGGGAATCAGAAGCAGAAGTGGACGCAAGACGAGGAAGATGCACTCATCGCCGGGGTTGAAAAGCACGGTCCCGGAAAGTGGAAAAACATTCTCAAAGATCCCCAATTTGCCCCTTTTCTTACTTCCCGTTCCAACATCGACCTTAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCGAAAGACAAGCCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCTTCTTCTACCAACTCCTCCACCACCACCACCACACCTCAAAACGCGGCTTCTGCTCCACAAAACGTTCCGTCTGATGTCACTGTCCCTGATTCTTCTCTGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAAGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGCGAAGGCTTGTTAGTCAAGGAAAACTTGAAAAGGTACAGAATTGTTACAAAATAAAAAAGGATGTCTCCTCGGACACAAAAGCACCTTCACCAAAACCAAAGGATGTCCGGCCAACACCATCACAACCTGCACCACAACCACAATGGCAGTCCTCGGTTTCTGTCTTTACAGCATCTAATGAGACAATAAAGGATGCTGCAGATACTGCAGCCTACAGAATTGCGGATGCTGAAAGTAAGTCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAGAAAATATCATTGCTGGTTGAACATAGCGATTCAATGTTGGAGCTAGCAAAAGACATATATGAACAATGTTCTCGTGGTGAAATTATCCTTTTGGCTTAA | 870 | 0.4471 | MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPSSTNSSTTTTTPQNAASAPQNVPSDVTVPDSSLNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKKDVSSDTKAPSPKPKDVRPTPSQPAPQPQWQSSVSVFTASNETIKDAADTAAYRIADAESKSYLAAEAVKEAEKISLLVEHSDSMLELAKDIYEQCSRGEIILLA* | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra9g0280 | 289 | PANTHER | TELOMERE REPEAT-BINDING FACTOR 4-RELATED | 1 | 288 | - | - | |
Vra9g0280 | 289 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 121 | 185 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Vra9g0280 | 289 | MobiDBLite | consensus disorder prediction | 53 | 122 | - | - | |
Vra9g0280 | 289 | SMART | h15plus2 | 119 | 180 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
Vra9g0280 | 289 | SUPERFAMILY | Homeodomain-like | 2 | 58 | IPR009057 | - | |
Vra9g0280 | 289 | Gene3D | - | 2 | 58 | - | - | |
Vra9g0280 | 289 | Gene3D | - | 118 | 200 | IPR036388 | - | |
Vra9g0280 | 289 | ProSiteProfiles | Myb-like domain profile. | 1 | 57 | IPR001005 | - | |
Vra9g0280 | 289 | PANTHER | SINGLE MYB HISTONE 4 | 1 | 288 | IPR044597 | GO:0003691 | |
Vra9g0280 | 289 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 1 | 62 | IPR017930 | - | |
Vra9g0280 | 289 | MobiDBLite | consensus disorder prediction | 185 | 217 | - | - | |
Vra9g0280 | 289 | SUPERFAMILY | "Winged helix" DNA-binding domain | 121 | 197 | IPR036390 | - | |
Vra9g0280 | 289 | SMART | sant | 4 | 59 | IPR001005 | - | |
Vra9g0280 | 289 | MobiDBLite | consensus disorder prediction | 80 | 120 | - | - | |
Vra9g0280 | 289 | Pfam | Myb-like DNA-binding domain | 5 | 56 | IPR001005 | - | |
Vra9g0280 | 289 | CDD | SANT_TRF | 6 | 56 | - | - | |
Vra9g0280 | 289 | Pfam | linker histone H1 and H5 family | 123 | 178 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra9g0280 | Vra-Chr9 | 2079707 | 2082957 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra9g0280 | 1 | 289 | Single Myb Histone (SMH) Gene Family | AT1G72740 | 46.758 | 4.08e-78 | 237 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB-related | Vra9g0280 | Linker_histone | 1.7e-07 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra9g0280 | K09422 | - | gmx:778177 | 416.387 |