Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0279 ATGGGGAATCAGAAGCAGAAATGGACTCAAGACGAAGAAGACGCGCTCATCGCCGGAGTTGAAAAGCACGGTCCCGGAAAGTGGAAGAACATTCTCAAAGATCCTCAATTCGCCCCTTTCCTCACTTCTCGTTCCAACATCGACCTCAAGGACAAATGGCGGAATTTGAGCGTCAGTAACGGTTCTCAAGGCTCCAAAGACAAACCTAGGGTTCCCAAGCTCAAGGCTCTTCCTCCTCCTCCACCTACTACTGCTGCCACCTCCTCCACCGCTCCTCAAAACGCCCCTCCTGCTTCTCAAAACACAAGGACTGAGGTCGCCGCCCTTGATTCTTCTCCGAATGACCAAGATGTCAAAAACCCTCCGAGGTATAATGCAATGGTTTTTGAGGCTCTATCAGCACTAAAAGATAATAATGGATCTGACCTAAATGCCATTGTTAGTTTCATCGAGCAAAAGCATCAGGTTCCTCAAAATTTTAGAAGGGCATTAAGTACAAGGTTGAGGAGGCTTGTTAGTCAAGGGAAACTTGAAAAGGTACAAAATTGTTACAAAATAAAAAGGGATGTTGCCTCCGGGACAAAATCACCTCGACCTAGATCAAAGGATGTCAAGCCACGGCAACTACAACCACAACCAGAACGGCAAAGCTCAGCGTCTGTCATTACGGCATCTAATGAGACAATAAAGGAAGCTGCCGATACTGCAGCCTACAGAGTTGCTGATGCTGAAAGTAAATCATATCTGGCTGCGGAAGCAGTAAAGGAGGCAGAAAAAATATCATTGTTGGTTGAACATAGTGATTCAATGTTGCAGTTAGCAAAAGACATATATGAACAATGTTCCCGTGGTGAAATTATCCTCTTGGCTTAA 873 0.4536 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGSQGSKDKPRVPKLKALPPPPPTTAATSSTAPQNAPPASQNTRTEVAALDSSPNDQDVKNPPRYNAMVFEALSALKDNNGSDLNAIVSFIEQKHQVPQNFRRALSTRLRRLVSQGKLEKVQNCYKIKRDVASGTKSPRPRSKDVKPRQLQPQPERQSSASVITASNETIKEAADTAAYRVADAESKSYLAAEAVKEAEKISLLVEHSDSMLQLAKDIYEQCSRGEIILLA* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0279 290 MobiDBLite consensus disorder prediction 210 224 - -
Vra9g0279 290 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 188 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra9g0279 290 MobiDBLite consensus disorder prediction 53 121 - -
Vra9g0279 290 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Vra9g0279 290 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Vra9g0279 290 SMART h15plus2 118 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra9g0279 290 Gene3D - 117 207 IPR036388 -
Vra9g0279 290 Gene3D - 2 58 - -
Vra9g0279 290 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Vra9g0279 290 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Vra9g0279 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Vra9g0279 290 SMART sant 4 59 IPR001005 -
Vra9g0279 290 Pfam linker histone H1 and H5 family 122 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra9g0279 290 MobiDBLite consensus disorder prediction 188 224 - -
Vra9g0279 290 MobiDBLite consensus disorder prediction 87 119 - -
Vra9g0279 290 SUPERFAMILY "Winged helix" DNA-binding domain 120 199 IPR036390 -
Vra9g0279 290 MobiDBLite consensus disorder prediction 188 209 - -
Vra9g0279 290 CDD H15 122 208 IPR005818 GO:0000786|GO:0003677|GO:0006334
Vra9g0279 290 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 289 - -
Vra9g0279 290 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0279 Vra-Chr9 2076110 2078778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0279 1 290 Single Myb Histone (SMH) Gene Family AT1G72740 48.276 4.29e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra9g0279 Linker_histone 2.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0279 K09422 - gmx:778177 421.779