Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0270 ATGACTTACTTTGGTATCGACATAGCGGATTTCTCATGGACTTGTCTGAGAGATTTTGATTTCACTTCTTTGTGCTCCCAAACCAGCATAATAGATATTTTAAAATTACTTTTCATGGGTGTCTTCTACACGTCTTTGCTTATTTCATTAATCAAAGGAAGTTCTGCATGTGGTAGCAACAGAAAAAACTGGGTTTTCCTTGTTGTCTCCATCTGTTGTGCTCTCATTAGCGTTGCACATTTTAGCAAAGGCTTGAGGTTGCGGAATCAGCAGAGCTGGTTGGGTTGTATTTTCAGAGCATTTGTGTGGCTTTCTTTTACAGTTTCATTGCATGTTCAGAGAAACAAATGGATCAAAATTCTAAACACTATCTGGTGGACATCTTCCTGTGTACTTGCTTCAGCTCTCAACATTGAAATCATGTTCAAAGAGTACACAATTGAACTGTTTGAAATACTACAATGGCTTGTACATTTCTTACTTCTCTTTTGCTCCTTCCAAAACCTCGGTTACTTTGTCACATCCCAAACTAAGCCAGAAGATACTGCAAGTTTATCTGAGCCTCTGATTGCTCAGAAAGTTGAAACTACACAAACACAACTAGGGCGTGCTACCCTTCTCAGTAAGTTAACTTTCTCTTGGGTTAATTCTTTACTCAGACTGGGTTACTCAAAGCCACTAGGTCTTGTAGATATCCCATTTCTTCTTCCTGAAGATGAAGCGAACTTGGCCTATCAAGCTTTTATGCATGCATGGGAGTCCCTTGTAAGGGAGACCAGCAATAACAACAGCAAAAACTTGGTTCTCTGGTCTGTAGCTAGAACCTTCTACAAGGAGAACATATTAATAGCATTATATGCATTACTCAGAAGTATTTGCTTGATAATTTCTCCTCTAATACTATATGCTTTTGTAAACTACACAAATACCACTGAGGGAGATCTCAAACAAGGTTTTTCCATACTGGGTGTTATGGTTCTCAGCAAAGTGGTTGAGTCTCTGTGTCAAAGACATTGCGGTTTTGGCTCAAGGAGATCAGGAATGAAAATTAGATCAGCTCTGATGGTGGCAGTGTACCAGAAACTGCTAAAGCTTTCGAGCTCAGCAAGGACAAGGCACTCAACTGGAGAAGTTGTGAATTACATTGCAGTTGACGCATATCGATTGGGAGAATTTCCATGGTGGTTTCATATAGCATGGACATCTGCAGTTCAACTTGTTTTGTCCATCATTGTCCTTTTTAGTATTGTGGGTGCTGGTGCTCTTCCAGGTTTAGTCCCTCTTCTCATCTGTGGACTTCTCAACGTACCATTTGCAAAGATCATACACAGTTGTCAGTCACAATTCATGATGGCACAAGATGAGCGTCTCAGATCAACTTCAGAAATTCTAAATAGTATGAAAATCATCAAGTTACAATCCTGGGAAGATAAATTCAAGAACTTAGTTTTGTCCCTACGTGCTAAAGAATTCAAATGGTTGACTAAGATACAGATCATCAAAGCTAGTGGGTCATTTCTATATTGGATTAATCCCGTCGTTGTTTCTACTGTTGTTTTCCTCGGGTGTGCTCTTTTCAAAAGTGTCCCACTGAATGCTGAGACCATTTTCACAGTAATTGCGACATTGAGGATGATGGCAGAACCTGTTCGAATGATCCCAGAGGCTCTATCTATTATGATCCAAGTTAAGGTCTCCTTTGATCGTCTCAACACCTTTTTGCTTGATGAAGAGCTAACTACTGTTAACGGTTATGGAAGAAATATAAAGCAAAGTTCAGTTAACGCAGTGGAAATCCAGGAAGGCAACTTCATTTGGGATCATGAATCAGTGTCTCCAACTTTAAGAGAGGTGAAGCTAGAAATCAAATGGGGACAGAAAATTGCAGTTTGTGGACCAGTTGGTGCTGGAAAGTCATCTCTTTTGTATGCAGTACTTGGAGAGATTCCCAAGATCTCAGGAACTGTCCATGTTGGTGGAACCATAGCCTATGTTTCTCAAACTTCTTGGATACAAAGTGGGACCGTTCGAGATAACATACTCTTCGGAAAGCCAATGAACAAAACCAGATATGAGAATGCCATTAAAGTTTGCGCCTTAGAAATGGATATCAATGATTTTAGCCATGGTGATCTTACCGAAATAGGCCAGCGAGGCATTAACATGAGTGGAGGACAAAGGCAAAGGATTCAACTAGCTCGAGCAGTTTATAATGATGCTGACATCTATCTCCTTGATGACCCATTCAGTGCAGTTGATGCACAAACAGCCGCAATTTTGTTCCATGACTGTGTCATGACTGCTTTAAGAGAGAAAACTGTTATTCTAGTTACTCATCAAGTGGAGTTTCTAACAGAAGTTGATACGATCCTGGTAATGGAGGATGGAAAAGTTACTCAATCAGGTAGTTATGAAGATCTCCAGTCAGCTGGCACTGCCTTTGAACAGCTTGTGAGTGCGCATAAAGCTGCATTAACAGGATTGGATAAAAAATATGAAAATAGTAGTGATTCTGGTATTGAATTTCTGGTACATCCAGAAGAATCTCAAAGTTTTAATCTCACTAAAAGTCAAAGTGAGCAAGTGATTTCTACCAAGGGACAACTTGGGGCACAACTTACACAAGAAGAAGAAAAAGTGACTGGTGATGTTGGGTGGAAACAATTCTGGGAATATATTTCATTTTCAAGGAGCTCATTTTTGTTTTGCTTAACCATGTTAGCAGAATTTGCTTTTATGGCTTTGCAGACTGCCTCATCCTATTGGCTTGCTCTAGCTTTCGAAATTCCAAAAGTAACCAGTGGCATTTTGATAGGAGTTTATGCATCATTTTCATTTCTCAGTGCTATATTTATATATATACGGTCTTTCCTAGCTGCTCATCTTGGATTAAAAGCTTCTGAAGTCTTCTTCTCAAGTTTCACATCAGCTATCTTCAATGCTCCAATGTTGTTCTTTGACTCAACGCCTGTAGGAAGGATTTTAACCCGAGCTTCATCTGATTTAAGTATTTTGGACATTGATATTCCTTATTCTCTCACTATGGTATCATTTATAGCAGCTGAAATTCTAGTAACAATATGTGTAATAGTATCAATCACATGGCAAGTTCTTATCGTTGCTGTTCCGGCTACAGTGGCATCAATATACATTCAGGGATATTATCAAGCCTCTTCAAGGGAATTGATGAGGATCAATGGAACCACAAAAGCTCCTGTCATGAATTTTGCTGCCGAGACATCACTTGGGGTGGTTACTATAAGAGCATTTAACATGGTGAACAGATTTTTCAACAACTACCTAAAGCTTGTGGACATGGATGCAGCAGTGTTCTTTCACGCCAATGTGGCCACGGAATGGTCAATTTTAAGGATTGAAATACTTCAAAACTTGACAGTATTCACAGCAGCTGCATTACTTATTCTACTTCCCAGGGGATCTGTATCATCGGGTCTTGTGGGATTGTCTCTTTCTTATGCATTGACATTGAAAGAATCCCAAGTATTTTGGAGTAGGATGTATAGCATGTTGTCAGACCATATCATCTCTGCAGAAAGAATCAAGCAATTCATTCACATTCCATCAGAGCCTCCTGCCATTGTGGAGGATAACAGACCTTCATCTTCATGGCCTTCCAAGGGTAGGATCGATCTTCGAGCCCTAGAGATTAGATATCGTCCAAATGCTCAATTAGTTCTCAAGGGTATAAATTGTACGTTTCTAGAAGGGAGTAGAGTGGGAGTTGTTGGAAGGACTGGAAGTGGCAAAACTACACTTATCAGTGCTTTGTTTCGCTTAGTTGAACCTTCAAGAGGTGATATTCTAATAGATGGGATCAACATATGCTTGATGGGGTTAAAGGATTTGAGAACAAAACTAAGCATCATCCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACCAACTTGGACCCACTAGGCTTCTACGAAGATGATGAAATATGGAAGGCTTTAGAGAAATGTCAGCTAAAGGACACAGTCGGAAAGCTACCAGGTCTCTTGGACTCTTCTGTGAGTGACGAAGGTGGAAATTGGAGCTTGGGACAGCGCCAACTGTTTTGCCTTGGTAGAGTACTACTTAAGAGGAACAGAATACTTGTCCTAGATGAAGCTACTGCATCTATTGACTCTGCAACAGATGCCATTCTGCAACAAGTGATAAGACAAGAATTTGCAGAATGCACAGTCATAACTGTGGCTCACAGAGTTCCAACTGTAATAGATAGTGACATGGTCATGGTCCTGTCTTATGGGAAACTAGTGGAATATGACGAGCCTTCAAAACTTATGGGCACCAACTCTTGGTTCTCTAATTTGGTTGCTGAATATTGGTCGAGCTGCAGGAAGAACTCATCGCCTATATCAATTATGAAAATGGAATGCAAATAA 4413 0.4011 MTYFGIDIADFSWTCLRDFDFTSLCSQTSIIDILKLLFMGVFYTSLLISLIKGSSACGSNRKNWVFLVVSICCALISVAHFSKGLRLRNQQSWLGCIFRAFVWLSFTVSLHVQRNKWIKILNTIWWTSSCVLASALNIEIMFKEYTIELFEILQWLVHFLLLFCSFQNLGYFVTSQTKPEDTASLSEPLIAQKVETTQTQLGRATLLSKLTFSWVNSLLRLGYSKPLGLVDIPFLLPEDEANLAYQAFMHAWESLVRETSNNNSKNLVLWSVARTFYKENILIALYALLRSICLIISPLILYAFVNYTNTTEGDLKQGFSILGVMVLSKVVESLCQRHCGFGSRRSGMKIRSALMVAVYQKLLKLSSSARTRHSTGEVVNYIAVDAYRLGEFPWWFHIAWTSAVQLVLSIIVLFSIVGAGALPGLVPLLICGLLNVPFAKIIHSCQSQFMMAQDERLRSTSEILNSMKIIKLQSWEDKFKNLVLSLRAKEFKWLTKIQIIKASGSFLYWINPVVVSTVVFLGCALFKSVPLNAETIFTVIATLRMMAEPVRMIPEALSIMIQVKVSFDRLNTFLLDEELTTVNGYGRNIKQSSVNAVEIQEGNFIWDHESVSPTLREVKLEIKWGQKIAVCGPVGAGKSSLLYAVLGEIPKISGTVHVGGTIAYVSQTSWIQSGTVRDNILFGKPMNKTRYENAIKVCALEMDINDFSHGDLTEIGQRGINMSGGQRQRIQLARAVYNDADIYLLDDPFSAVDAQTAAILFHDCVMTALREKTVILVTHQVEFLTEVDTILVMEDGKVTQSGSYEDLQSAGTAFEQLVSAHKAALTGLDKKYENSSDSGIEFLVHPEESQSFNLTKSQSEQVISTKGQLGAQLTQEEEKVTGDVGWKQFWEYISFSRSSFLFCLTMLAEFAFMALQTASSYWLALAFEIPKVTSGILIGVYASFSFLSAIFIYIRSFLAAHLGLKASEVFFSSFTSAIFNAPMLFFDSTPVGRILTRASSDLSILDIDIPYSLTMVSFIAAEILVTICVIVSITWQVLIVAVPATVASIYIQGYYQASSRELMRINGTTKAPVMNFAAETSLGVVTIRAFNMVNRFFNNYLKLVDMDAAVFFHANVATEWSILRIEILQNLTVFTAAALLILLPRGSVSSGLVGLSLSYALTLKESQVFWSRMYSMLSDHIISAERIKQFIHIPSEPPAIVEDNRPSSSWPSKGRIDLRALEIRYRPNAQLVLKGINCTFLEGSRVGVVGRTGSGKTTLISALFRLVEPSRGDILIDGINICLMGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGFYEDDEIWKALEKCQLKDTVGKLPGLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQQVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMGTNSWFSNLVAEYWSSCRKNSSPISIMKMECK* 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0270 1470 Pfam ABC transporter 1233 1381 IPR003439 GO:0005524
Vra9g0270 1470 Pfam ABC transporter 615 749 IPR003439 GO:0005524
Vra9g0270 1470 Gene3D - 573 838 IPR027417 -
Vra9g0270 1470 CDD ABC_6TM_ABCC_D2 900 1191 IPR044726 GO:0140359
Vra9g0270 1470 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 90 1461 - -
Vra9g0270 1470 SUPERFAMILY ABC transporter transmembrane region 889 1198 IPR036640 GO:0005524|GO:0016021
Vra9g0270 1470 Gene3D ABC transporter type 1, transmembrane domain 258 572 IPR036640 GO:0005524|GO:0016021
Vra9g0270 1470 SUPERFAMILY ABC transporter transmembrane region 269 574 IPR036640 GO:0005524|GO:0016021
Vra9g0270 1470 CDD ABCC_MRP_domain2 1214 1434 - -
Vra9g0270 1470 CDD ABC_6TM_ABCC_D1 282 570 IPR044746 GO:0140359
Vra9g0270 1470 SMART AAA_5 624 797 IPR003593 -
Vra9g0270 1470 SMART AAA_5 1242 1434 IPR003593 -
Vra9g0270 1470 ProSitePatterns ABC transporters family signature. 722 736 IPR017871 GO:0005524
Vra9g0270 1470 Gene3D - 1199 1449 IPR027417 -
Vra9g0270 1470 Pfam ABC transporter transmembrane region 901 1162 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0270 1470 Pfam ABC transporter transmembrane region 282 543 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0270 1470 Gene3D ABC transporter type 1, transmembrane domain 866 1197 IPR036640 GO:0005524|GO:0016021
Vra9g0270 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 904 1163 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0270 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 599 820 IPR003439 GO:0005524
Vra9g0270 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1207 1449 IPR027417 -
Vra9g0270 1470 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 90 1461 - -
Vra9g0270 1470 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 281 562 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra9g0270 1470 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1218 1450 IPR003439 GO:0005524
Vra9g0270 1470 CDD ABCC_MRP_domain1 597 797 - -
Vra9g0270 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 595 819 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0270 Vra-Chr9 2010086 2017539 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0270 597 830 Calmodulin-binding Proteins AT2G36910 26.772 6.34e-21 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0270 - - gmx:100804798 2476.43