Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0266 ATGGGTGGTTCTGGGAGATGGCTTAAGTCGCTCATTTCTCTCAGGAAGCCCTCCGCAACTGATCAAGAGAAGGGTGGTGACAAGAGTAAGAGAAAGTGGAAGTTATGGAGGGGCACTTCAGAAGGGTTTGGGATTGGATCATCCATGCAGAAGGGGCAGAGTGGTGGTGGGTCCTTTGTGGTGGATGATGGGGCATTTGCTGCTGCTTTGGCTGCTGTGGTGAGAACTCCACTCAAAGACTTCATGGTCATCAAGCAGGAATGGGCTGCCATTCGAATACAGGCAGTGTTTCGTGGTTTCTTGGCAAGACGAGCTTTGAGGGCCCTGAGAGCAGTGGTGAGGTTGCAAGCTATATTTCGTGGTTGGCAAGTGAGGAAGCAAGCAGCTGTTACTCTAAGATGCATGCAGGCTCTTGTGCGAGTTCAAGCACGTGTCAAGGCAAGGAATGTGGGGAAAGCTGTCAGTGAGCCCTGCAATGAAGCTGACCCTGTTCAGCAAGCTGAGCAAGGATGGTGTAACATTCCAGGAACTGCGGAAGAAGTTAAGGCAAAATTACAGATGAGGCTGGAAGGAGCAATTAAGAGGGATAGGACAAAGGCATACTCTCAGTCTAAGCAGAAATCAACAGTGAGTGCTAGTCCAAACACAAAAGGTGCTAGGGCAGTGATTCCTCCTCTCAAGCACCGCAGTCTAGATAGTAAGAGCTCAGGATGGGGCATGTTAGATCGCTGGATGGCTGCAAAACCATGGGAGAGCAGGTCGATGGTAGACATGTATTTGGACTCATCTGACATGACTCCAGCAGTTACTAGTAAAAGTGATCATTTTGTTCTTCCCTTGAATTCTGATCAACAAATTGGCTCAGTCAAAGCAAGAAGGAACGGTGTGACAACCAGGATTTCATCTAAGTCACTTACGACTAGTCAATCAACTCCATCATCTTCATCCATAAGCTCTGAATGCATGTATGATGATAGCCCTCTGTCAACTTCATGCACATCTGAATCACCACCTGTGCCATCTACCAACAATGTTATAGTGGACACATCAGAGGAAGGAAATGTTTGTAAACCAAGCTACATGAATCTGACAGCATCAACCAAAGCTAAACTGAAACCCTATAGGTGTTTTTCTCAGAATTCTAAGAGAATTTTTATGGATGATTGCGTGTCACTTAGCGGAGTTACTAGAAGCAGTTCTGGTTCCTATCCTTCTGCTAATACGTGGAAGAATATCTATGCTACACCTTTAAGGACACGCTATCAAAAGCAATACACAATGGAAGATAAGTAG 1293 0.4602 MGGSGRWLKSLISLRKPSATDQEKGGDKSKRKWKLWRGTSEGFGIGSSMQKGQSGGGSFVVDDGAFAAALAAVVRTPLKDFMVIKQEWAAIRIQAVFRGFLARRALRALRAVVRLQAIFRGWQVRKQAAVTLRCMQALVRVQARVKARNVGKAVSEPCNEADPVQQAEQGWCNIPGTAEEVKAKLQMRLEGAIKRDRTKAYSQSKQKSTVSASPNTKGARAVIPPLKHRSLDSKSSGWGMLDRWMAAKPWESRSMVDMYLDSSDMTPAVTSKSDHFVLPLNSDQQIGSVKARRNGVTTRISSKSLTTSQSTPSSSSISSECMYDDSPLSTSCTSESPPVPSTNNVIVDTSEEGNVCKPSYMNLTASTKAKLKPYRCFSQNSKRIFMDDCVSLSGVTRSSSGSYPSANTWKNIYATPLRTRYQKQYTMEDK* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0266 430 Gene3D - 83 156 - -
Vra9g0266 430 PANTHER IQ-DOMAIN 5-RELATED 1 429 - -
Vra9g0266 430 MobiDBLite consensus disorder prediction 291 322 - -
Vra9g0266 430 Pfam IQ calmodulin-binding motif 110 127 IPR000048 GO:0005515
Vra9g0266 430 Pfam IQ calmodulin-binding motif 88 107 IPR000048 GO:0005515
Vra9g0266 430 SMART iq_5 108 129 IPR000048 GO:0005515
Vra9g0266 430 SMART iq_5 85 107 IPR000048 GO:0005515
Vra9g0266 430 ProSiteProfiles IQ motif profile. 86 114 IPR000048 GO:0005515
Vra9g0266 430 ProSiteProfiles IQ motif profile. 110 137 IPR000048 GO:0005515
Vra9g0266 430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 70 128 IPR027417 -
Vra9g0266 430 MobiDBLite consensus disorder prediction 196 218 - -
Vra9g0266 430 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0266 Vra-Chr9 1978952 1982170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0266 1 413 IQD Protein Family AT1G72670 42.857 1.34e-87 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0266 - - vun:114166337 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2547 5 32261936 32264442 Vra9g0266 9 1978952 1982170 PCT