Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0257 ATGGAGATGAAGGGTTTTGTGTTCAACCAACATCAGCAGCAGCAGCAGCAGCCAGTAGTGGAGGAGAACATGTCAAATTTGACTTCTGCATCTGGTGAAGCCAGTGCTTCCTCAGGCAACAGAACTGAAATTGGAACCAGTTACCCTCAGCAATACTTGGCTCCACCGCCAACTCAGACTCAGCCACCAAAGAAAAAGAGAAACCTTCCTGGTAACCCAGACCCTGATGCTGAAGTTATAGCCTTGTCCCCCAAGAGTCTTCTGGCCACAAATAGGTTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGACCAGAACCTGCAACTTCACAGAAGAGGGCACAATTTGCCGTGGAAGCTGAAGCAGAGAACAAGCAAAGAGGTGAGGAAGAAGGTGTATGTGTGTCCAGAGGCAAATTGTGTGCATCATGACCCATCAAGGGCTCTTGGGGACCTGACTGGGATCAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCCAAGAAATATGCAGTTCAATCAGATTGGAAAGCCCATTCCAAAACCTGTGGCACAAGGGAGTACAGATGTGACTGTGGAACCCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCTTTCTGTGATGCATTAGCAGAAGAGAGTGCAAGAGCAATCACTGGCACAGGCAACAACAACCAACTTCTTCCCCCACAACCTTCTTCCTCTCATCAGCACCACCACAACAACATCACCCTTCAAACCCAATTCAACCCTCAAAATATCCATGCTTTCTCATTGAAAAAAGAGCAGCAAAGTTTCAATCTTAGGCCAGAAATGCCCCCTTGGCTGGGCCCACCAACAACAGTTGATAATCTCTCCTCATCCCCATCCATAATGTTCTCTCCCCCTCCACACCAAGAAAACCCTAACCCTAGTCTTGGTCCCACTCTTGCTGCCTACCAAACAGTCCCTAACCCTTCCCCACACATGTCAGCCACAGCATTGCTGCAGAAAGCAGCTCAGATGGGTGCAACCATGAGCAGAAGTGGTTCCTCACCAGCCATGGCAAGGGCCCACCATCAGGTTCACATGACTTCTTCAGCAGATTCTGCCACTGCTCATTTTGGCTTGAACTTGTCCTCACGTGATCAAGACAACACCACCACCACTTCAACAACACCAACCACTGTTACGACTAACACTCCTGCAGTGTTTAGCCATGGCTTGTTATCATCATCATCATCGTCATCACCTTTGGGGAATAAAGCTGCTGCTGCTGCTGCTTCTGTTGTATCTTCTGCTCCATCCCTTCTTCATGATGTTATACACTCTTTCTCTTCTCCCTCTGCCTTCCAAGGAACCCCTTTTGAGGATGCATTTGGTGGCATTCAGAGTTCAAAAAAATTAGATGACGATAGCTTGTATCTGCATGATACCTTCTCAAAAGCAAGTGGTGCAGCAGGAAATGAAGGGTTGACCAGAGATTTCTTGGGTCTCAGGCCACTCTCTCATAATGATATTCTCACCATTGCTGGCATTGGAAACTGCATTCATGATCAGCAAAACCAATCTCAAAAGCAATGGCAAGGTTAG 1602 0.4732 MEMKGFVFNQHQQQQQQPVVEENMSNLTSASGEASASSGNRTEIGTSYPQQYLAPPPTQTQPPKKKRNLPGNPDPDAEVIALSPKSLLATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKKVYVCPEANCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARAITGTGNNNQLLPPQPSSSHQHHHNNITLQTQFNPQNIHAFSLKKEQQSFNLRPEMPPWLGPPTTVDNLSSSPSIMFSPPPHQENPNPSLGPTLAAYQTVPNPSPHMSATALLQKAAQMGATMSRSGSSPAMARAHHQVHMTSSADSATAHFGLNLSSRDQDNTTTTSTTPTTVTTNTPAVFSHGLLSSSSSSSPLGNKAAAAAASVVSSAPSLLHDVIHSFSSPSAFQGTPFEDAFGGIQSSKKLDDDSLYLHDTFSKASGAAGNEGLTRDFLGLRPLSHNDILTIAGIGNCIHDQQNQSQKQWQG* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0257 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Vra9g0257 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 518 - -
Vra9g0257 533 Pfam Zinc-finger double-stranded RNA-binding 93 115 IPR022755 -
Vra9g0257 533 MobiDBLite consensus disorder prediction 230 249 - -
Vra9g0257 533 Gene3D Classic Zinc Finger 74 143 - -
Vra9g0257 533 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 26 518 - -
Vra9g0257 533 MobiDBLite consensus disorder prediction 1 78 - -
Vra9g0257 533 MobiDBLite consensus disorder prediction 381 405 - -
Vra9g0257 533 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Vra9g0257 533 Gene3D Classic Zinc Finger 147 226 - -
Vra9g0257 533 MobiDBLite consensus disorder prediction 7 54 - -
Vra9g0257 533 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Vra9g0257 533 SMART c2h2final6 169 189 IPR013087 -
Vra9g0257 533 SMART c2h2final6 93 115 IPR013087 -
Vra9g0257 533 SMART c2h2final6 134 164 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0257 Vra-Chr9 1899659 1902979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0257 24 533 IDZ Gene Family AT3G13810 46.643 7.96e-135 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra9g0257 zf-C2H2_jaz 7.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0257 K25870 - gmx:100808344 765.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2538 5 32220960 32224173 Vra9g0257 9 1899659 1902979 PCT