Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0254 ATGAACAACAATAACAACAGCAGCACCAGCACCATTACAACCACCAACACCAAAACCAACAACAGAATCTCCAATACAAGAAATGGCAACAGCACCACTCAGGCTTGCGCTGCATGCAAGTACCAACGTAGAAAGTGTGCACCCGATTGCATTCTCGCACCGTATTTCCCTCACGATCGACAGCGCCAGTTTCTCAACGCTCACAAGTTGTTCGGAGTAAGCAACATCACCAAAATCATTAAGGTTGTCAGCCCTCGCGACAAGGACCAAGCCATGCGCACCATAATCTACCAATCCGACATGCGTGCCTCCGACCCTGTCGGCGGCTGCTACAGGTACATTGTCGACCTGCAGACTCAGATTGAGTACTGCCGAGCCGAGCTCGACCTCGTCCTTCAACAACTCGCCATGTTTCGAGCTCAGGCTCAGCACCAGAATCAGCACCAGTATCAGCACCAGCACGGTATCTATGCTCCCAACAGCGTTAACGTCACCGTTAATGGAGATGGTGAGGTTTTGAACGCCGACCCGATGGGGCTGTACGCCCAGCAACAGTATCAGTGTCTGCAGCCACACCAACAGGAGCAGTATGTTATGATGCATGAAAATGGGAGCCAGAACTTCAACGGCGCCACCCCTTTGCAGGAACAGATGAACACGTGGGCTGTGCAGAACACTGCTGTGTCGCTTTCTTCGTTGTCGTTGCAAGGACAGAGTAGTAATGTTAGCGATGAATACGATCACAAGGCCGTCATTGACATTGATTCTGATGAGAGAAGTGAGTTAGGGTTCGAGTCTGAAGAATTAGTCCATCGCAGTGATGAATCAGTGTTGTTTAAGATAGATGATGCAGTAATAAAAGCTGAGGGTGACTGCATGCAACAAGCTCAAGAGCATGATCTGAAAGGTGCAGCAACATCGTTTAGCCTCACAAACTGTACTTGCTGA 948 0.4958 MNNNNNSSTSTITTTNTKTNNRISNTRNGNSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKVVSPRDKDQAMRTIIYQSDMRASDPVGGCYRYIVDLQTQIEYCRAELDLVLQQLAMFRAQAQHQNQHQYQHQHGIYAPNSVNVTVNGDGEVLNADPMGLYAQQQYQCLQPHQQEQYVMMHENGSQNFNGATPLQEQMNTWAVQNTAVSLSSLSLQGQSSNVSDEYDHKAVIDIDSDERSELGFESEELVHRSDESVLFKIDDAVIKAEGDCMQQAQEHDLKGAATSFSLTNCTC* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0254 315 Pfam Lateral organ boundaries (LOB) domain 35 130 IPR004883 -
Vra9g0254 315 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Vra9g0254 315 MobiDBLite consensus disorder prediction 1 26 - -
Vra9g0254 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 29 254 - -
Vra9g0254 315 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 29 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0254 Vra-Chr9 1882331 1883724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0254 34 152 AS2 family AT3G13850 74.790 1.28e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra9g0254 LOB 6.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0254 - - pvu:PHAVU_010G138500g 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0254 9 1882331 1883724 Vra9g0254 9 1882331 1883724 ECH
Vra5g2536 5 32199490 32200107 Vra9g0254 9 1882331 1883724 PCT