Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra9g0246 | ATGAGCCGCTACGACAGCCGCTCCGGCGACCCCACTTCTTACCGTGACAGGAGGAGTGATTCTGGCCTAGGTGCACCTACAGGGTTTGGTGGTTCTGTACAGCATTCTTCGTCAAACAGGAGGGATCATGATGATGGTGGATCACCAAAGAGGAACCTCAGTTTGGATGGTTTACCTCATTTTGAGAAAAACTTCTACATCGAGTCACCCGCAGTAAGGGCAATGACTGATGCTGAGGTTAATGAGTACCGACAGCAGAGGGAAATAACTGTTGAAGGTCGAGATATCCCCAAGCCTGTCAAGACCTTTCAAGATGCTGGTTTTCCAGAATATGTGATGCAAGAAATTACAAAAGCTGGCTTTACTGAGCCTACACCCATTCAATCTCAAGGTTGGCCCATGGCTTTGAAGGGGCGTGATCTCATAGGAATAGCTGAAACAGGTTCAGGGAAGACACTTGCTTACTTATTACCTGCCATTGTGCATGTTAATGCTCAGCCGATCCTAGATCCTGGAGATGGACCTATTGTGTTAGTATTGGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAGGCTACTAAATTTGGTGCATCATCTAGGATTAAGAGTACATGCATATATGGTGGGGTTCCAAAGGGACCTCAAGTGCGTGATCTCCAGAAAGGTGTTGAAATTGTAATTGCCACTCCCGGAAGGTTAATTGATATGCTCGAATCAAATCATACCAACTTACAGAGGGTCACATATCTTGTATTGGATGAAGCTGATAGGATGTTGGATATGGGGTTTGATCCTCAGCTGCGGAAGATTGTTTCTCAGATCCGACCGGACCGTCAAACTTTGTATTGGAGTGCTACTTGGCCAAAGGAGGTCGAACAATTGGCACGGAAGTTCCTTTACAACCCATATAAAGTAATTATAGGGTCTGAAGATTTGAAAGCTAACCATGCAATACGTCAATATGTTGACATTGTTTCGGAAAAGCAGAAATATGATAAATTGGTGAAGTTGCTAGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACCAAAAAAGGATGTGATCAGATCACTAGGCAACTCCGCATGGATGGCTGGCCTGCACTTTCAATTCATGGAGACAAAAGTCAAGCAGAAAGAGATTGGGTGCTCTCAGAATTTAAATCAGGAAAAAGTCCTATTATGACTGCAACAGATGTTGCAGCCCGTGGTTTAGATGTGAAGGATGTGAAGTATGTAATAAATTATGACTTTCCGGGGTCACTTGAAGACTATGTCCATCGCATTGGACGGACTGGGAGAGCTGGTGCAAAAGGAACTGCCTACACATTCTTCACAGCTGCTAATGCTAGATTTGCAAAGGAACTAATCGCCATACTTGAGGAAGCTGGACAGAAAGTTAGTCCTGAATTAGCAGCAATGGGCCGTGGTGCACCACCTCCGCCTTCAGGTCCCCGAGGTTTCCAAGACCGTGGGAGGGGTTATGGCAGTTCTCGTCCATGGAGCTGA | 1524 | 0.4541 | MSRYDSRSGDPTSYRDRRSDSGLGAPTGFGGSVQHSSSNRRDHDDGGSPKRNLSLDGLPHFEKNFYIESPAVRAMTDAEVNEYRQQREITVEGRDIPKPVKTFQDAGFPEYVMQEITKAGFTEPTPIQSQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAVQIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLQRVTYLVLDEADRMLDMGFDPQLRKIVSQIRPDRQTLYWSATWPKEVEQLARKFLYNPYKVIIGSEDLKANHAIRQYVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIAILEEAGQKVSPELAAMGRGAPPPPSGPRGFQDRGRGYGSSRPWS* | 508 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra9g0246 | 507 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 173 | 456 | IPR027417 | - | |
| Vra9g0246 | 507 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 335 | 480 | IPR001650 | - | |
| Vra9g0246 | 507 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 253 | 261 | IPR000629 | - | |
| Vra9g0246 | 507 | SMART | ultradead3 | 120 | 323 | IPR014001 | - | |
| Vra9g0246 | 507 | PANTHER | LD32873P | 55 | 495 | - | - | |
| Vra9g0246 | 507 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 132 | 307 | IPR014001 | - | |
| Vra9g0246 | 507 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 55 | 495 | - | - | |
| Vra9g0246 | 507 | Pfam | Helicase conserved C-terminal domain | 332 | 441 | IPR001650 | - | |
| Vra9g0246 | 507 | SMART | helicmild6 | 360 | 441 | IPR001650 | - | |
| Vra9g0246 | 507 | CDD | DEADc_DDX5_DDX17 | 112 | 307 | - | - | |
| Vra9g0246 | 507 | MobiDBLite | consensus disorder prediction | 475 | 507 | - | - | |
| Vra9g0246 | 507 | MobiDBLite | consensus disorder prediction | 1 | 56 | - | - | |
| Vra9g0246 | 507 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 101 | 129 | IPR014014 | GO:0003724 | |
| Vra9g0246 | 507 | Pfam | DEAD/DEAH box helicase | 125 | 296 | IPR011545 | GO:0003676|GO:0005524 | |
| Vra9g0246 | 507 | Gene3D | - | 311 | 481 | IPR027417 | - | |
| Vra9g0246 | 507 | Gene3D | - | 64 | 310 | IPR027417 | - | |
| Vra9g0246 | 507 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Vra9g0246 | 507 | CDD | SF2_C_DEAD | 320 | 450 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra9g0246 | Vra-Chr9 | 1791311 | 1799058 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra9g0246 | 88 | 461 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.867 | 5.51e-77 | 246 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra9g0246 | K12823 | - | gmx:100790464 | 985.326 |