Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0242 ATGCAAAGTTACACAAGTTTTCCAACTTTCAATTACATTCCAAGTATTACAGCTGTGGAGGAAACTCCTAAGCTCCTCCATGGAACAATTGAAGCTACCATCTTCAATGCCTCACCTTACTCACCTTTATTTCCCTTCAATTGTTTATGTAGAAATGGAAAGCCTGCTTATGTGACTATAAAGATAGACAACCAAAAGTTTGCAAAAACCAGTGAAGAAAGCAACCGTGTGTGGAACCAAACCTTTCAGGTTCAGTGTGCTCATCCAGCTGATTCATGCATCACCATTACACTGAAAACATCACATTCTTCCATACTGGGGAAGTTCCATATTCAGGCTCAGCAGCTGTTGAAGAAAGGAGGTTTGATCAATGGGTTGTTCCCTCTCCTCATGGATAATGGAAAACCAAACCCAAAACTTAAGTTGAAGTTTATGCTTTGGTTCAAGCCAGCAGATTTGGAACCAAGTTGGGCAAAGATGTTGAGCAATGACTGGGAATTTCAAGGGCTGAAGGAGGCTAGCTTCCCACTAAGGTCCAATTGTCAGGTTAAACTTTATCATGATGCTCACCATTCTTCAGCTTTTCAACCTCCCTTTGATCTATGTGGAGCTCCAAAGAAGCTATGGGAGGATGTCTATAAAGCCATTGAGGGTGCAAAGTATCTAGTTTATATTGCAGGCTGGTCCTTCAATCCCATGATGGTTCTGGTTAGAGATCCTCACACAGAAATCCCACATGCCAGAGGTATTAAGTTAGGTGACCTGTTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGCTTTGGGATGATGAAACATCTTTACCCTTTGTGAAGAACAAAGGCGAATTGAACAACCAAGATGAGGAAGCTTTTGCTTTTTTCAACCACACAAAAGTAATATGCAGAAAGTGTCCCAGATTACACAACATGTTCCCAACACTCTTTGCTCACCATCAGAAGACTATAACAGTGGACACAAAACCTTCCAAATCTGTTGATGACAGAGAGCTAATGAGCTTTGTGGGTGGGTTGGATTTGTGTGATGGAAGATATGACACAGAGCAGCATTCATTGTTTCAAACACTCATTAGGGAATCTCATTGTTATGATTTCTACCAAACAAGCATTGAAGAAGCTAGCCTCAACAAAGGAGGGCCAAGGGCACCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCCTGGGATGTGCTAGCCAATTTTGAGCAAAGATGGACAAAGCAGTGTGATCCTTCTTTTCTAATCCCTTCTAGCACCTTGGCAAATCTTATGCCAAATACGAGCTCAAGCATTCCTAGGGAGAGGAATTGGAAAGTTCAAATATACAGGTCAATTGATCATATCTCAGTTAGTGAGTTGTCTACAAAGTCAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCAATTAGGCGTGCTGAAAGGTTTATATACATTGAAAGCCAGTATTTCATTGGAGGATGCCATTGGTGGAAGAAAGATAGGCACTGTGGTTGTACTAATCTAATTCCCATTGAAATTGCACTGAAGGTGGTAAGTAAGATTAAGGCAAAGGAGAGATTTGCTGTGTACATAGTCATACCAATGTGGCCAGAAGGAGAACCTGAAAGTGAACCTGTTCAAGATATACTGCATTGGACTAGAGAAACAATGGCAATGATGTATAGGTTGATTGGAGAAGCAATACAAGAAAGTGAGCAACAGGGACACCCCAGAGACTACTTGAATTTCTTCTGTCTTGCAAACAGGGAGCAGAAGGGACCAGGAGAGTATCTTCCACTAGATTCACCCCAACCTGAAACTCAATACTGGAATGCTCAAAAGAATAGGAGATTCATGGTTTATGTTCACTCCAAGTTCATGATAGTGGACGACCTATACATACTGATAGGATCAGCTAATGTAAACCAAAGATCCATGGACGGGCAAAGGGACACTGAGATTGCAATAGGATGTTACCAGTCTCAAGATGAAGATGATAATCAGGAAATGAACCTAGATGAAATTCAAGCATATAGATTGTCTCTATGGTATGAGCACACAGTGAGTGTTGATGAGTTGTTCTTGGAGCCAGAAAGATTGGAATGTGTGGAGAGAATGAGATCAATAGGAGATGAAATGTGGGAAATCTACAGCAGTGAAGAGGTTAGAGACATGGAAGGTGTTCACCTTGTGAGTTACCCTGTGAGAGTAACACCAGAAGGGTATGTGAAAGACCTCACTGACGGAGTTCATTTTCCTGATACAAATTCTCTTGTCAAAGGCAAAAGGTCTAAAATATTGCCTCCTATCTTTACCACTTAG 2340 0.4162 MQSYTSFPTFNYIPSITAVEETPKLLHGTIEATIFNASPYSPLFPFNCLCRNGKPAYVTIKIDNQKFAKTSEESNRVWNQTFQVQCAHPADSCITITLKTSHSSILGKFHIQAQQLLKKGGLINGLFPLLMDNGKPNPKLKLKFMLWFKPADLEPSWAKMLSNDWEFQGLKEASFPLRSNCQVKLYHDAHHSSAFQPPFDLCGAPKKLWEDVYKAIEGAKYLVYIAGWSFNPMMVLVRDPHTEIPHARGIKLGDLLKKKAEEGVAVRVMLWDDETSLPFVKNKGELNNQDEEAFAFFNHTKVICRKCPRLHNMFPTLFAHHQKTITVDTKPSKSVDDRELMSFVGGLDLCDGRYDTEQHSLFQTLIRESHCYDFYQTSIEEASLNKGGPRAPWHDAHACVIGEAAWDVLANFEQRWTKQCDPSFLIPSSTLANLMPNTSSSIPRERNWKVQIYRSIDHISVSELSTKSTVERSIHEAYVEAIRRAERFIYIESQYFIGGCHWWKKDRHCGCTNLIPIEIALKVVSKIKAKERFAVYIVIPMWPEGEPESEPVQDILHWTRETMAMMYRLIGEAIQESEQQGHPRDYLNFFCLANREQKGPGEYLPLDSPQPETQYWNAQKNRRFMVYVHSKFMIVDDLYILIGSANVNQRSMDGQRDTEIAIGCYQSQDEDDNQEMNLDEIQAYRLSLWYEHTVSVDELFLEPERLECVERMRSIGDEMWEIYSSEEVRDMEGVHLVSYPVRVTPEGYVKDLTDGVHFPDTNSLVKGKRSKILPPIFTT* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0242 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 624 651 IPR001736 GO:0003824
Vra9g0242 779 Pfam Phospholipase D C terminal 697 768 IPR024632 -
Vra9g0242 779 SUPERFAMILY Phospholipase D/nuclease 175 426 - -
Vra9g0242 779 Gene3D C2 domain 49 149 IPR035892 -
Vra9g0242 779 Gene3D Endonuclease Chain A 463 676 - -
Vra9g0242 779 Pfam Phospholipase D Active site motif 317 353 IPR001736 GO:0003824
Vra9g0242 779 Pfam Phospholipase D Active site motif 627 651 IPR001736 GO:0003824
Vra9g0242 779 Gene3D Endonuclease Chain A 194 446 - -
Vra9g0242 779 SMART pld_4 624 651 IPR001736 GO:0003824
Vra9g0242 779 SMART pld_4 316 353 IPR001736 GO:0003824
Vra9g0242 779 PIRSF PLD_plant 18 779 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra9g0242 779 PANTHER PHOSPHOLIPASE D 19 779 IPR015679 -
Vra9g0242 779 PANTHER PHOSPHOLIPASE D ALPHA 19 779 - -
Vra9g0242 779 SUPERFAMILY Phospholipase D/nuclease 449 707 - -
Vra9g0242 779 Pfam C2 domain 56 129 IPR000008 -
Vra9g0242 779 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 316 353 IPR001736 GO:0003824
Vra9g0242 779 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 25 144 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0242 Vra-Chr9 1770064 1774467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0242 48 779 Phospholipase D Gene Family (Wang group) AT1G55180 61.911 0.0 954
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0242 K01115 - gmx:100812642 1481.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0242 9 1770064 1774467 Vra9g0242 9 1770064 1774467 ECH
Vra5g2520 5 32095088 32098397 Vra9g0242 9 1770064 1774467 PCT