Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0238 ATGAGTCGAGAGCAACAGAAACGGGGGAAGCAAGAGAAAGGTTCTGATGGTGCTGAGAAGGTCATTGTTGCCGTTAAGGCATCTAAAGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACCCATGTTGTTCAACCTGGGGATTGCATTACACTGCTAGTGGTTGTGCCTTCACAAAGTTCAGGCAGAAGATTATGGGGTTTTCCAAGATTTGCTGGTGACTGTGCCAGTGGTATTAAGAAGTACCCTCCAGGAACAATATCAGAGCAGAAGAGTGATATCACTGATTCTTGCTCTCAGATGATCCTTCAACTCCATAACGTCTATGATCCAAACAAGATTAATGTCAGGATTAAAATTGTTTCTGGATCACCTTGTGGAGCAGTGGCAGCAGAAGCCAAAAAAGCACAAGCCAATTGGGTCGTGTTAGACAAACAGCTCAAACATGAAGAAAAGCGATGCATGGAAGAACTACAGTGTAACATCGTGGTTATGAAGCGTTCTCAACCAAAAGTACTGCGGTTGAATTTGATTGGACCTCCGAAGAAGGATGTTGAAGAAGCAGGTCCATCACCTCCCGAGCAAGATGACATGTCTGAAAAGCGAAGCAAAATAAAGCTTGATTCCTTAAATTCTATCAAAGGACCTGCTGTAACTCCATCTAGCAGCCCTGAGCTAGGGACACCATTCACTGCAACCGAAGCTGGTACTTCATCAGTTTCAAGCTCTGATCCGGGAACTTCACCATTCTTCATCTCAGAGACGAATGGTGAGTCCAAAAAAGAGGAAACTATCCAAGAAAGTCAAGAGCTTTGTGATACTAATTCAGACACTGAAAGTGAAAGTCTGTCCACATCTTCAGCAAGCATGAGATACCAACCGTGGATCACAGAATTGCTTTTGCATCAACAATCATCACAACGCAATGAAGAGAGATCAGAGACAACTCATGGTATGCCTCAAGCATCTACAACCAGAGCTTTCCTTGATAAATATTCTAGGCTTGACAGAGGAGCTGGATTTGAAATATCAACCTATAGGAATGACTTGGATTTCAGTGGAAATTTAAGAGAAGCAATAGCATTATCTGGAAATGCCCCACCTGGTCCCCCTCCACTGTGCTCAATATGTCAACACAAGGCACCTGTTTTTGGAAAACCTCCAAGATGGTTCAGCTATGCTGAGTTAGAACTTGCTACAGGCGGTTTTTCGCAGGCCAACTTCCTGGCTGAAGGAGGGTTTGGATCTGTTCACAGAGGGGTTCTACCAGAAGGACAAGTCATTGCTGTCAAGCAACATAAATTAGCTAGTTCTCAAGGTGATCTTGAATTTTGTTCAGAGGTGGAAGTCCTGAGCTGTGCTCAACACCGGAATGTTGTTATGCTCATTGGGTTCTGTATAGAGGATAAGAGAAGGCTACTGGTTTATGAGTACATATGCAATGGATCATTGGATTCTCATTTATATGGGCGACAAAAGGATCCATTAGAGTGGTCTGCACGGCAAAAAATTGCTGTTGGTGCAGCTCGTGGATTACGATATCTTCATGAAGAGTGCAGAGTGGGTTGTATTATCCACCGTGACATGAGGCCAAACAACATTCTCATAACTCACGATTTTGAACCCCTGGTTGGTGATTTTGGACTGGCAAGGTGGCAGCCTGATGGAGACACAGGTGTGGAAACTAGAGTGATTGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGTGGTCAAATCACTGAAAAAGCTGATGTTTATTCCTTTGGGGTGGTATTAGTTGAGCTTGTTACTGGGAGAAAAGCTGTGGATCTCACTAGGCCAAAGGGACAGCAGTGCCTTACCGAGTGGGCAAGACCTCTCTTAGAAGAATATGCAACAGAGGAACTGATTGATCCAAGACTTGGTAACCACTATTCTGAAAATGAGGTGTATTGCATGCTTCATGCTGCCTCATTATGCATACAGAGAGATCCTCAATGTAGGCCACGCATGTCACAGGTTCTCCGAATACTAGAGGGTGACATGGTGATGGACACAAATTACATCTCCACTCCAGGCTATGATGCAGGAAACCGAAGTGGGAGACTGTGGTCAGAGCCATTGCAAAGGCAGCACCATTATAGTGGTCCCCTTTTAGAAGAGACTCTGGAGTCCTTCAGCGGGAAGCTATCCCTTGACAAGTACAAGCCTTCCTACTGGGGTGATAGGGACAAGGCTAGGAGGGCCTCATGTGAAGATGATATTTGA 2253 0.4461 MSREQQKRGKQEKGSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGIKKYPPGTISEQKSDITDSCSQMILQLHNVYDPNKINVRIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKRCMEELQCNIVVMKRSQPKVLRLNLIGPPKKDVEEAGPSPPEQDDMSEKRSKIKLDSLNSIKGPAVTPSSSPELGTPFTATEAGTSSVSSSDPGTSPFFISETNGESKKEETIQESQELCDTNSDTESESLSTSSASMRYQPWITELLLHQQSSQRNEERSETTHGMPQASTTRAFLDKYSRLDRGAGFEISTYRNDLDFSGNLREAIALSGNAPPGPPPLCSICQHKAPVFGKPPRWFSYAELELATGGFSQANFLAEGGFGSVHRGVLPEGQVIAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQKDPLEWSARQKIAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLTRPKGQQCLTEWARPLLEEYATEELIDPRLGNHYSENEVYCMLHAASLCIQRDPQCRPRMSQVLRILEGDMVMDTNYISTPGYDAGNRSGRLWSEPLQRQHHYSGPLLEETLESFSGKLSLDKYKPSYWGDRDKARRASCEDDI* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0238 750 Pfam Protein tyrosine and serine/threonine kinase 407 672 IPR001245 GO:0004672|GO:0006468
Vra9g0238 750 SUPERFAMILY Protein kinase-like (PK-like) 387 681 IPR011009 -
Vra9g0238 750 MobiDBLite consensus disorder prediction 303 323 - -
Vra9g0238 750 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 708 - -
Vra9g0238 750 MobiDBLite consensus disorder prediction 187 208 - -
Vra9g0238 750 CDD USP_Like 20 143 - -
Vra9g0238 750 MobiDBLite consensus disorder prediction 214 255 - -
Vra9g0238 750 MobiDBLite consensus disorder prediction 269 287 - -
Vra9g0238 750 ProSitePatterns Tyrosine protein kinases specific active-site signature. 524 536 IPR008266 GO:0004672|GO:0006468
Vra9g0238 750 Gene3D Phosphorylase Kinase; domain 1 375 478 - -
Vra9g0238 750 Gene3D Transferase(Phosphotransferase) domain 1 479 685 - -
Vra9g0238 750 PANTHER OS01G0253100 PROTEIN 16 708 IPR045271 GO:0004714|GO:0006468
Vra9g0238 750 CDD STKc_IRAK 409 675 - -
Vra9g0238 750 MobiDBLite consensus disorder prediction 175 287 - -
Vra9g0238 750 ProSiteProfiles Protein kinase domain profile. 403 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0238 Vra-Chr9 1745169 1751033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0238 383 692 Trihelix Transcription Factor Family AT1G70460 51.097 3.61e-101 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra9g0238 PK_Tyr_Ser-Thr 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0238 - - gmx:100816340 1443.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0238 9 1745169 1751033 Vra9g0238 9 1745169 1751033 ECH
Vra5g2516 5 32072302 32078653 Vra9g0238 9 1745169 1751033 PCT